Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3571g00015 ATGCAGCCCTGTAGCAGAGAAATGCAAGGGATAAACTCCCTCTTCAACTCTTCTTCCCAAATCTCCCTCCAGGACCTCCACACCACCACCACCACCACCACCACCACCGCCACCAACCAGATCCAAAATTCACACATCAACCACCACCACCACCAACCACTCCAACACCATCACCAACTCCCTCACTTCGACCCAACCTCTCAGGATGACTTTCTCGACCAAATGTTCTCCTCCTGCTCCTGGCCCGACCTCAACCCAAACAAGTCCTTGTGGGACCCCAATACCCTCTCCGACCAAACCACTCCCTCCGACAACGACAATACCAATAATACTGACCATAATAATGTCGCTTTCCCCTACGACGAACCCTCCACCTTGGCCTCCAAGTTCCGCAACCACCAGATCAGCGCTTCCTCTACAAAAAACGCCGCCGCAGCTCTCATGCTCCAGCATCAACTCCTCATGTCCAGAGACTCTCCGCTCCTTCACATGCCGCTTTCCTTACCTCAAAACGACGTCGTTGACGCCTCCTCCTTCAAATCCCCCAATCCCGGCGGCGAGACTTCGGTCCAGGCTCTCTACAACGGCTTTGCCGGATCTCTGCATGGCGCCGGTCAAGCCTCCAACCAGACTCAGCATTTTCAACATCCTCAGGGAAGTTCTAATCCGATGCAAGGGCAAAATTTTGGTGCGCCGGTTACTGGGGGCGCAACGAACCAAGCTCCGGCGAGTGGCGCAGCTGCTCAGCCGAGGCAGAGGGTTCGTGCCAGGAGAGGTCAAGCCACGGACCCTCACAGCATCGCTGAAAGGTTGAGAAGGGAGAGAATCGCAGAGAGAATGAAAGCCCTACAGGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTCGCACCCCTTGTTGCTGATATGTCTTCTGAGGGTGGCGGTGACTGCATCCAAGCGAACGGCAACGCTAACCGCGGCGGTTCCCTCGCGCCAAATTCCAACAGCAACAACAACCAAACCACAGCGTCAACCTCGAACGACAGCTTGACCATGACGGAGCACCAGGTAGCGAAACTGATGGAGGAGGACATGGGTTCCGCCATGCAGTACCTTCAAGGCAAGGGCCTTTGCCTCATGCCCATTTCTCTTGCCACTGCCATCTCCACTGCCACGTGTCACACCAGGAACCCCTTGATCAACGCTGCCTCCGGTAGCACCCAGATTCCGACCAACGCCGCCCCCGGCACTCTCGTCAACCCCGCCGTGGCGTCCAACGGCGAAGGCCCGTCTTCTCCGAGCATGTCCGTGCTGACGGTGCAGTCGGCCGTGGTGGGCAACGAGGGCGCCGTGAAGGACGCTGCCTCCGTTTCGAAGCCGTGA 1458 0.5693 MQPCSREMQGINSLFNSSSQISLQDLHTTTTTTTTTATNQIQNSHINHHHHQPLQHHHQLPHFDPTSQDDFLDQMFSSCSWPDLNPNKSLWDPNTLSDQTTPSDNDNTNNTDHNNVAFPYDEPSTLASKFRNHQISASSTKNAAAALMLQHQLLMSRDSPLLHMPLSLPQNDVVDASSFKSPNPGGETSVQALYNGFAGSLHGAGQASNQTQHFQHPQGSSNPMQGQNFGAPVTGGATNQAPASGAAAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQANGNANRGGSLAPNSNSNNNQTTASTSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLINAASGSTQIPTNAAPGTLVNPAVASNGEGPSSPSMSVLTVQSAVVGNEGAVKDAASVSKP 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3571g00015 485 Gene3D - 255 317 IPR036638 GO:0046983
Vium3571g00015 485 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 260 309 IPR011598 GO:0046983
Vium3571g00015 485 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 258 320 IPR036638 GO:0046983
Vium3571g00015 485 MobiDBLite consensus disorder prediction 90 113 - -
Vium3571g00015 485 MobiDBLite consensus disorder prediction 47 67 - -
Vium3571g00015 485 MobiDBLite consensus disorder prediction 201 267 - -
Vium3571g00015 485 SMART finulus 266 315 IPR011598 GO:0046983
Vium3571g00015 485 MobiDBLite consensus disorder prediction 202 246 - -
Vium3571g00015 485 FunFam Transcription factor bHLH66 257 322 - -
Vium3571g00015 485 Pfam Helix-loop-helix DNA-binding domain 265 310 IPR011598 GO:0046983
Vium3571g00015 485 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 125 413 - -
Vium3571g00015 485 MobiDBLite consensus disorder prediction 344 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3571g00015 Vium-Chr3571 133543 137272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3571g00015 249 484 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 63.281 1.65e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3571g00015 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3571g00015 - - gmx:100807286 634.795