Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3571g00014 ATGAAGGTGGTGGGGAAGGAGAAATTGATTAAGGTGGGGATGATGGAGCAGATGAAAAGGGAGATCTCGGCCATGAACATGGTCAAGCACCCCAGCATCGTTCAGCTCCACGAGGTCATGGCCAGCAAGTCCAAGATCTACATCGCCATGGAGCTCGTGCGCGGCGGCGAGCTCTTTAACAAGATCGCCCGCGGCCGTCTCAGGGAGGACACGGCGCGCCTCTACTTCCAGCAGCTCGTCTCCGCCGTCGACTTCTGCCACAGCCGTGGCGTCTACCACCGCGACCTCAAGCCGGAGAACCTCCTTCTCGACGAGGAGGGCAACCTCAAAGTCACCGACTTCGGCCTCAGCACCTTCTCCGAGCACCTCCGCCAGGACGGCCTGCTTCACACCACTTGCGGCACCCCGGCCTACGTGGCGCCCGAGGTCATCGGGAAAAAGGGCTACGACGGCGCCAAGGCCGATATCTGGTCTTGCGGTGTAATCCTCTATGTACTCCTCGCAGGGTTTTTACCCTTCCAGGATGACAACTTGGTCTCCTTGTATAAGAAAATTTACCGCGGTGACTTCAAGTGCCCGCCGTGGTTTTCATCCGAGGCACGCCGCCTCATTACGAAGCTCCTTGACCCGAACCCGAATAACCGAATAACGATTTCCAAGATCATGGACTCGTCCTGGTTTAAAAAGTCGGTTCCGAAGGACGTGATGGGGGCGAAGAGAGAAGAGTTGGATTTGGAAGAGAAGATTAAGCAGTTGGAAGAATCTAAGTCCACCACGATGAATGCTTTCCATTTAATTTCGCTTTCGGAAGGGTTCGATTTGTCGCCCTTGTTCGAGGAGAAGAAGAAGGAGGAGAAGGAGATTCGGTTTGCGACCACACGCACCGCGAGTAGCGTGATCTCACGGCTGGAGGAGGTGGCGAAGGCGGTGAAGTTTGACGTTAAGAAAAGCGAGAGCAAAGTGAGGTTGCAGGGTCAACAGCGGGGTCGGAAAGGGAAGCTTGCAATTGCTGCGGATTTATACGCCGTGACGCCATCGCTTTTGGTGGTGGAGGTGAAGAAGGACAACGGTTATACCTTGGAGTACAACCAGTTCTGCAGCAACCAACTTCGTCCTGCGCTTAAAGACATCGTTTGGAGGACTTCCCCTTCTGAGAATCCTACACCTGTTTGA 1173 0.5473 MKVVGKEKLIKVGMMEQMKREISAMNMVKHPSIVQLHEVMASKSKIYIAMELVRGGELFNKIARGRLREDTARLYFQQLVSAVDFCHSRGVYHRDLKPENLLLDEEGNLKVTDFGLSTFSEHLRQDGLLHTTCGTPAYVAPEVIGKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVSLYKKIYRGDFKCPPWFSSEARRLITKLLDPNPNNRITISKIMDSSWFKKSVPKDVMGAKREELDLEEKIKQLEESKSTTMNAFHLISLSEGFDLSPLFEEKKKEEKEIRFATTRTASSVISRLEEVAKAVKFDVKKSESKVRLQGQQRGRKGKLAIAADLYAVTPSLLVVEVKKDNGYTLEYNQFCSNQLRPALKDIVWRTSPSENPTPV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3571g00014 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 91 103 IPR008271 GO:0004672|GO:0006468
Vium3571g00014 390 Pfam NAF domain 258 316 IPR004041 GO:0007165
Vium3571g00014 390 SUPERFAMILY Protein kinase-like (PK-like) 1 235 IPR011009 -
Vium3571g00014 390 ProSiteProfiles NAF domain profile. 255 279 IPR018451 GO:0007165
Vium3571g00014 390 Pfam Protein kinase domain 2 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3571g00014 390 Gene3D Transferase(Phosphotransferase) domain 1 58 233 - -
Vium3571g00014 390 ProSiteProfiles Protein kinase domain profile. 1 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3571g00014 390 Gene3D Phosphorylase Kinase; domain 1 1 57 - -
Vium3571g00014 390 CDD CIPK_C 261 375 - -
Vium3571g00014 390 Gene3D Kinase associated domain 1, KA1 254 380 - -
Vium3571g00014 390 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 375 - -
Vium3571g00014 390 Coils Coil 235 258 - -
Vium3571g00014 390 FunFam Non-specific serine/threonine protein kinase 53 234 - -
Vium3571g00014 390 FunFam Non-specific serine/threonine protein kinase 255 379 - -
Vium3571g00014 390 SMART serkin_6 1 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3571g00014 Vium-Chr3571 111608 113499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3571g00014 14 384 CBL-interacting serine-threonine protein kinases AT4G30960 71.842 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium3571g00014 Pkinase 2.7e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3571g00014 - K07198 vum:124834915 769.229