Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3571g00007 ATGGTCATCTGGTTTATTATCCCAGCAACAAGAAGCCCTCAGACTGATCACAAGAATAATGCGCTTGCATTGATTGTTTTGCTCCAATATGTTCCAAGATTATATTTGATTTTTCCGTTAAGTTCTCAAATAATCAAAGCGACAGGAGTGGTTACGAAGACTGCTTGGGCAGGAGCTGCATATAACTTGCTGCTGTATATGTTAGCTAGCCACGTTCTAGGGGCATCTTGGTATCTTCTATCTGTGGACCGATACACTACTTGTTTGAAATCCTTTTGCAAAAAGGAACAAAATCCTGAAAATTGTTTTGGCTACCTGGACTGCAGTTCTTTGAATGTTGAGCTGCGCAAGTTATGGGCAAATAGTACTAATGTGTTTAGCAGCTGTGATCCCAATAATAAGGATATTAATTTCAAGTTTGGAATATTTGAAAATGCAGTAAAGAAACATGTTGTTTCTTCAGCCTTTATTCCAAAATACCTTTATTGTTTATGGTGGGGACTGCAACAATTAAGTTCTTATGGGCAAAACCTAGAAACTAGCACGTTTATTGGGGAAACATCATTCGCCATTGTCATTGCTATCTTAGGTCTTGTATTATTTTCCCATTTGATTGGGAACATGCAGACATATTTGCAATCTATCACTATAAGGCTTGAGGAGTGGAGGCTCAAGCGAAGGGACACAGAAGAATGGATGAAGCATCGCCAACTCCCTGAAGATTTGAGAAGTCGTGTTGGACGATTTGTTCAATATAAATGGCTTGCTACTCGTGGAGTTGATGAGGAAACCATTCTACGTGCATTACCAGCTGATCTACGCCGTGATATTCAAAGACACCTTTGCTTAGACCTTGTTAGAAGAGTTCCCTTCTTCTCACAGATGGATGATCAGCTTCTGGATGCAATATGTGAGCGGCTGGTATCGTCTCTGAGCACTCAAGGCACCTACATTGTTCGTGAGGGTGACCCCGTGACTGAAATGCTTTTTATCATTAGAGGTAGACTGGATAGTTCTACTACCAACGGTGGCCGTACTGGTTTCTTCAACTCAATCATATTGAGACCTGGAGATTTTTGTGGCGAGGAGCTTCTCTCTTGGGCGTTACTCCCAAAATCAACCATTAATTTGCCTTCTTCAACCAGGACAGTTAAAGCCATAAGTGAGGTCGAGGCTTTTGCTCTTCGGGCTGAAGACCTCAAGTTTGTTGCCAATCAATTTAGGCGCCTTCACAGTAAAAAGCTGCAGCACACTTTTCGATTTTATTCCCACCATTGGAGGACTTGGGCAGCCTGCTTTATACAGGCTGCTTGGCGCCGATATAAGAAAAGGATATCTATGAAAGACCTTGGTTTGAGGGAATCCATTCCTTCAGATGAGACAGTAGCTAGTGAGAGAGAACATGAGGACTATTCTGCCAGTTCAAATTCAGCTCAAGCTAAATTGAACCTTGGGGCAACAATTCTTGCTTCGAGATTTGCTGCTAATACACGAAGAGGAGCCTTGAAAATTAAAGATGACATGCCCAAGTTACCAAAGCCCGAAGAACCCGACTTTTCCGCCGAAGCCGATGATGATTAG 1581 0.4219 MVIWFIIPATRSPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSVDRYTTCLKSFCKKEQNPENCFGYLDCSSLNVELRKLWANSTNVFSSCDPNNKDINFKFGIFENAVKKHVVSSAFIPKYLYCLWWGLQQLSSYGQNLETSTFIGETSFAIVIAILGLVLFSHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMKHRQLPEDLRSRVGRFVQYKWLATRGVDEETILRALPADLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTINLPSSTRTVKAISEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRISMKDLGLRESIPSDETVASEREHEDYSASSNSAQAKLNLGATILASRFAANTRRGALKIKDDMPKLPKPEEPDFSAEADDD 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3571g00007 526 MobiDBLite consensus disorder prediction 504 518 - -
Vium3571g00007 526 CDD CAP_ED 291 422 IPR000595 -
Vium3571g00007 526 Pfam Cyclic nucleotide-binding domain 314 402 IPR000595 -
Vium3571g00007 526 Pfam Ion transport protein 15 217 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium3571g00007 526 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 3 519 - -
Vium3571g00007 526 SUPERFAMILY Voltage-gated potassium channels 18 213 - -
Vium3571g00007 526 MobiDBLite consensus disorder prediction 504 526 - -
Vium3571g00007 526 SMART cnmp_10 291 422 IPR000595 -
Vium3571g00007 526 FunFam Cyclic nucleotide-gated ion channel 1 218 282 - -
Vium3571g00007 526 FunFam Cyclic nucleotide-gated ion channel 1 289 407 - -
Vium3571g00007 526 Gene3D Jelly Rolls 289 409 IPR014710 -
Vium3571g00007 526 ProSiteProfiles cAMP/cGMP binding motif profile. 291 421 IPR000595 -
Vium3571g00007 526 SUPERFAMILY cAMP-binding domain-like 221 413 IPR018490 -
Vium3571g00007 526 Gene3D Helix hairpin bin 219 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3571g00007 Vium-Chr3571 56141 63634 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3571g00007 1 525 Ion Channels AT4G30360 73.635 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3571g00007 K05391 - gmx:100810967 999.964