Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3571g00005 ATGGGGAAGCAGCAAAGACAGAAAATCAATGCAACCACTAAGGACAAGAACCTTAACTCCACAAACACTGTCACCACCAAGGTCAAACGAACAAGAAGAAGTGTCCCCAGAGATTCCCCTCCTCAACGCAGCTCAATATACAGAGGAGTCACCAGGCACCGATGGACAGGCCGATATGAAGCTCATTTGTGGGACAAAAATTGCTGGAATGAGTCACAGAACAAGAAAGGACGACAAGTCTACCTCGGTGCTTATGACGATGAAGAGGCCGCAGCACACGCTTACGATCTAGCAGCATTGAAATACTGGGGTCAAGATACCATCCTTAATTTTCCATTATCTACTTACCAGAATGAACTGAAAGAAATGGAGGGTCAATCTCGAGAAGAGTATATTGGATCATTACGAAGGAAAAGCAGCGGTTTTTCTCGTGGAGTTTCTAAATACAGAGGTGTTGCAAGACACCATCATAATGGAAGGTGGGAGGCTCGGATTGGCAGGGTTTTCGGCAACAAATATCTTTACCTCGGAACTTACGCAACGCAGGAAGAAGCTGCGACAGCATATGACATGGCAGCTATTGAATATCGAGGACTCAACGCTGTCACCAATTTCGACCTTAGCCGCTACATAAAGTGGCTTAAGCCAAACAATAACGATAACACTGCGAACTCTAATGTTCTTGACGCTAACCCTAATTCTGAGACCAACTTTACCCCAAATTCTAATCAACAACAAGGATTCAATTTTTTCCAGAGTCAAGAATCGACGGTGACTCAGCCTCGATCTTCTGGTGCCACGTCAGCCCTAGGACTTTTGCTGCAGTCATCCAAGTTCAAGGAGATGATGGAGATGACTTCCGCCGCCGACTTGTCGACGGCGGCGTCGGAGTCTGAGTTGGTGCCGTGCACGTTTCCCGATGATATTCAGACCTATTTCGAGTGTGAAGATTCCAACAGATATGGAGAAGGGGATGATAACATGTTTGGCGAGCTCAACGGGTTTGTGCCCCATATGTTCCATTGTGATGACTTTGAGTCTTGA 1044 0.4626 MGKQQRQKINATTKDKNLNSTNTVTTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQDTILNFPLSTYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNDNTANSNVLDANPNSETNFTPNSNQQQGFNFFQSQESTVTQPRSSGATSALGLLLQSSKFKEMMEMTSAADLSTAASESELVPCTFPDDIQTYFECEDSNRYGEGDDNMFGELNGFVPHMFHCDDFES 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3571g00005 347 SUPERFAMILY DNA-binding domain 45 114 IPR016177 GO:0003677
Vium3571g00005 347 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 17 264 - -
Vium3571g00005 347 CDD AP2 147 208 IPR001471 GO:0003700|GO:0006355
Vium3571g00005 347 FunFam AP2-like ethylene-responsive transcription factor 147 208 - -
Vium3571g00005 347 MobiDBLite consensus disorder prediction 1 29 - -
Vium3571g00005 347 SUPERFAMILY DNA-binding domain 147 208 IPR016177 GO:0003677
Vium3571g00005 347 PRINTS Ethylene responsive element binding protein signature 188 208 IPR001471 GO:0003700|GO:0006355
Vium3571g00005 347 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Vium3571g00005 347 ProSiteProfiles AP2/ERF domain profile. 46 112 IPR001471 GO:0003700|GO:0006355
Vium3571g00005 347 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700|GO:0006355
Vium3571g00005 347 FunFam AP2-like ethylene-responsive transcription factor 45 114 - -
Vium3571g00005 347 Gene3D AP2/ERF domain 147 208 IPR036955 GO:0003700|GO:0006355
Vium3571g00005 347 Gene3D AP2/ERF domain 46 114 IPR036955 GO:0003700|GO:0006355
Vium3571g00005 347 SMART rav1_2 46 118 IPR001471 GO:0003700|GO:0006355
Vium3571g00005 347 SMART rav1_2 148 212 IPR001471 GO:0003700|GO:0006355
Vium3571g00005 347 MobiDBLite consensus disorder prediction 1 45 - -
Vium3571g00005 347 Pfam AP2 domain 46 104 IPR001471 GO:0003700|GO:0006355
Vium3571g00005 347 Pfam AP2 domain 147 198 IPR001471 GO:0003700|GO:0006355
Vium3571g00005 347 MobiDBLite consensus disorder prediction 221 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3571g00005 Vium-Chr3571 43666 46515 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3571g00005 42 239 AP2-EREBP Transcription Factor Family AT5G57390 62.381 1.18e-90 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium3571g00005 AP2 6.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3571g00005 K09285 - gmx:100795869 582.793