Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3567g00008 ATGGAGCAGCCGCTTCAACCGCAGCCGGACGCTGCGGCAAACACGGCTCGGGGTTTGGAGGACTCCCGCCTGGTGGGAGCCACTGTCGTGCCTGCTGGCTATGCTGATGTGGCCGAAAAAGATGTTAATAGTAGCGTGTCGAATTCGGAGGTTACGGTCGTCGAAGGCGCCGTTTTGAAACGGAACGTGGTCGTCCGAGACGAGGAGGATGTTTGCTTCATTTGCTTCGACGGTGGGAGCCTCGTTCTCTGTGATCGGAGGGGTTGTCCTAAAGCGTATCATCCCACGTGTATTAAGCGAGACGAAGCGTTTTTTCGATCAAAGGCTAAATGGAATTGCGGTTGGCATATATGTAGCGCCTGTGAAAAGGCTTCGCATTATATGTGCTATACTTGCACGTACTCTTTGTGCAAGGGGTGCACAAAAGACGCTGATTTTGTTTGTGTCCGAGAGAATAAAGGTTTATGCGGAATATGCATGAGGACATATGGATTCGATGACAAAAGCAGCTGGAAATCTTTCAAGGTTATTGGATGTATTTTGAAAGGGAACTTATCTTTAACATTTGATGAGCTCCTACGGGCTAAAAACCCTTGGAAAGCTGTTGCTCCTATGAGTTATAAGGTTCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGTTCCGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAGAACAAAAGACCCAAGAGACAGCCAAAACTTCTTGGCAAGGGTGATTGCCTGGACAGGATGGGTTCAGGTGGTGACAGAGTTATGTCTTTGCCTGAATGCACAAAATGGGCATCGAAGGAGCTACTAGAGTTTGTTTCACATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAAACTCTCTTGCTGGAGTATGTGAAGAAAAATAATCTTCGTGATCCTCAACAGATGTCTGAAATTGTTTGTGATTCTAGACTACTAAATTTGTTTGGAAAATCACGAGTCAGCCAAATTGAAATGGTAAAGCTCCTTGAATCCCATTTTCTTTTAAAACACAACGGACCAGCAGAAAATACTTTTGGAGCAGGAATTATTAATGCTGTTGCTAGTGAAGGGGAGGCCATTGACACTCATAGTAAACAGTTGATGTTAGTTAATGACAAGATATGTAAAACACATAAAAATGCCGATGTTCTAGTTCCGCAAAATAAACCCAATGAATGCTGCATAGATGTTCACAATCTTAACTTGATCTACTTGCGGCGATGTCTGATGGAGAATCTGACTGAAGATATTGAAAAGATTCACGAGAAGGTTGTTGGTTCATTTGTGCGGATAAGAATCTCGAGCAGTGCAAAAAAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAATCATACAAAACTGGGACAAGAACAACTGATTTTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGTCATACCCATTGCTGAAATTTCTAATCAGGAGTTCTCTGAGGTGAAAATAGATATTATTTTAAATCATATTACCTTCAAAAAATCTCTAGAATGTGTAGAAGAGTTAAGTTTTTATTCTATGCAAAGTTTGCTGATGTTGCTGGAAGCTGAGATTTTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAGGTTAAAGAATATGAGGAGAAGTTGCAGCTACTGAACTCTCCAGAGGAGCGGCAACGCAGGCTGCAAGAAATTCCAGATGTACACTCTGACCCCAATTTAGATTCAATGTTTGAGTCTGATGAAGATGATGGAGAGTCAGATGAAAGGAAGCAAGATACCAATATATTTTCAAAATATCTTGGGTTTGATAGAAGAGAGAGGGGCTCTTTTTTTCCAAGAATTTCGAACAATGTCTTCAATGATGCGGGAGGCAAAACACAAGACTTGCCTGTTACCCGAGAACATGTTGGGAATATATGTACAGTAAAGAACTGTGACACAGCTATCGAGGATAGCACTAATACGGTTGTGAAATCAGAAGTGTCTAGTGTTGCAGTGGACATTTCACCATCACTTATCCCAGTGGAGATACAGCAGCCACTTAATGAATTTTTGAATGATAGATCATGGAATTATCAAGATCCAACTGGGAAGGTTCAAGGGCCTTTTTCTATGTTGCAGCTGTACAAATGGAATGTAAGTGGAGGTTTCCCTCCAGATCTCAAAATATGGAGGATAGGTGAGAAACAGGATAACTCTATACTGTTAACGGATGCACTAAGTGGGAAGTGTTCCAAAAATGTGTCATTGCCATTCAACAACCCATTGCTCTCTCTTGGGGTCAGTACATTGGATAATAAACATAATGTTCAGGATGCTGGGAAGAATGTAGTGAAGAATGGAATTTCTGCCGATGGGCAAATTATTGAACAGATCAAGGAAAAAATAGTGGATGATACCTCTACCCAGTCTGATGGTAAAGCTGAGCCTGTCAGGAGCAATGGATGGCTTGGGCCGCTGCATTTATACCCTTCACCATTGACAACTGCCATTACTGAGAAAATGAATGAAACGTCTGATAAATTAAGGAAAGATCATGGGATTGTGCGAAACTCTCAAGATAATGGAAATAATGGCTCAAACAGAACAGTTGATGGGCAGAGTAATAGTGGGCAAAGTTATCAGAAGCCATCAGATAGTGAAGAGAATGCAGGGCAATCTTCTGGACAGACCTGGAGACACCCTAATGTTAATATTAATAGCTCTTCGGATTGCCTGGTTGCCACGTCAGCTCATGTTTCGGGCAAAAAAACATCACCTCATAAGCTGGGATTTGATTTGCATAATTCTCCTTCCCCTCCAGCATGTAATACATCATCTGGACAGACCTGGAGACCCCCTCATGTTAATAGCCCTTCCAATTGCTTGGTTACCACGTCAGCTCATGCCTCTGATACAAAAACATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCCTCCCCTCCTGCATGTAATACATCATCTGGACAGACCTGGAGTCACCCTACTGTAAATAGTTCTTCTGATTGCTTGGTTAACACACCGGCTCATGTTTCTGGTACAAAAACATCACCACATAAGCTGGGCTTTGATTTGCATAATCCTCCTTCCCCTCCAGCTTGTAATACATCTTCTGGACAGACTTGGAGACACTTTGATATAAATATTTCTACCAATTGCTTAGTTACCTCATCAAATCATGTTTCTGGTGTAAAAACATCACCGCATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAACTTGTAATACATCAACATGGCAGGCAATCATTGGCGAGCCCAATGATTTTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGCGATGATTTGACTGAAGGTTCTAAAAATGATTGTCTCAGCTTTGTTGCAGACCTTGGCCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCACTGGAGATTTAAACTTACCATCTCAACCGACAGCAGCAGAGGAACCATTACGGCAAGCAGATGTACATCACCATCATCAAAGAATTTCTGATGAGCATTCTTCAAGAAGTTCTAAAGTTGAGGTGGGTACAAAAAACACAAGTGTCTCGGGTAATCAATGGGATTCAGGCTCAGAAAATTCACCCGTTGTTCCATCTCCTGCAACCTTGGGCCTGGCTATAGACACCACTTGGAGACTTGGGCTAGATAGTACACCTTTGGGGTGGAGTGGAATAGATCAAGGAAATACAAATGTGGGTTGGGGAGTAGGACAAACAGCAGTGCAGGAAACCAGGAGCTCAAATTCATACACTTCTGTAGTAACTCCAGGTTTTGGGGATAACCAAACAAGATATGGCAGTGATCGTTTTTCTGTGCCTAGAGATCGGGGTTCTCAAGGTCATGCTAGGGAATCGGGTTTTGGTAGAAGCAGAATTGCATTTAACAGGCAACCGTCGTATGGTGTTGGGAATGGAGGCTCATATAGGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAGGGGGCATCCTGTGATTACTGGCACCCAAGTAATAGTGGGCAAAGTTATCAGAAGCCATCAGATAGTGAAGAGAATGCAGGGCAATCTTCTGGACAGACCTGGAGACACCCTAATGTTAATATTAATAGCTCTTCGGATTGCCTGGTTGCCACGTCAGCTCATGTTTCGGGCAAAAAAACATCACCTCATAAGCTGGGATTTGATTTGCATAATTCTCCTTCCCCTCCAGCATGTAATACATCATCTGGACAGACCTGGAGACCCCCTCATGTTAATAGCCCTTCCAATTGCTTGGTTACCACGTCAGCTCATGCCTCTGATACAAAAACATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCCTCCCCTCCTGCATGTAATACATCATCTGGACAGACCTGGAGTCACCCTACTGTAAATAGTTCTTCTGATTGCTTGGTTAACACACCGGCTCATGTTTCTGGTACAAAAACATCACCACATAAGCTGGGCTTTGATTTGCATAATCCTCCTTCCCCTCCAGCTTGTAATACATCTTCTGGACAGACTTGGAGACACTTTGATATAAATATTTCTACCAATTGCTTAGTTACCTCATCAAATCATGTTTCTGGTGTAAAAACATCACCGCATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAACTTGTAATACATCAACATGGCAGGCAATCATTGGCGAGCCCAATGATTTTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGAGATGATTTGACTGAAGGTTCTAAAAATGATTGTCTCAGCTTTGTTGCAGACCTTGGCCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCACTGGAGATTTAAACTTACCATCTCAACCGACAGCAGCAGAGGAACCATTACGGCAAGCAGATGTACATCACCATCATCAAAGAATTTCTGATGAGCATTCTTCAAGAAGTTCTAAAGTTGAGGTGGGTACAAAAAACACAAGTGTCTCGGGTAATCAATGGGATTCAGGCTCAGAAAATTCACCCGTTGTTCCATCTCCTGCAACCTTGGGCCTGGCTATAGACACCACTTGGAGACTTGGGCTAGATAGTACACCTTTGGGGTGGAGTGGAATAGATCAAGGAAATACAAATGTGGGTTGGGGAGTAGGACAAACAGCAGTGCAGGAAACCAGGAGCTCAAATTCATACACTTCTGTAGTAACTCCAGGTTTTGGGGATAACCAAACAAGATATGGCAGTGATCGTTTTTCTGTGCCTAGAGATCGGGGTTCTCAAGGTCATGCAAGGGAATCGGGTTTTGGTAGAAGCAGAATTGCATTTAACAGGCAACCGTCGTAAGGTGTTGGGAATGGAGGCTCATATAGGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAGGGGGCATCCTGTGATTACTGGCACCCATGA 5676 0.4294 MEQPLQPQPDAAANTARGLEDSRLVGATVVPAGYADVAEKDVNSSVSNSEVTVVEGAVLKRNVVVRDEEDVCFICFDGGSLVLCDRRGCPKAYHPTCIKRDEAFFRSKAKWNCGWHICSACEKASHYMCYTCTYSLCKGCTKDADFVCVRENKGLCGICMRTYGFDDKSSWSXSFKVIGCILKGNLSLTFDELLRAKNPWKAVAPMSYKVQSPHELYHLRDDKGSGSENSCIDIESNNLKNKRPKRQPKLLGKGDCLDRMGSGGDRVMSLPECTKWASKELLEFVSHMKNGDTSLLSQFDVQTLLLEYVKKNNLRDPQQMSEIVCDSRLLNLFGKSRVSQIEMVKLLESHFLLKHNGPAENTFGAGIINAVASEGEAIDTHSKQLMLVNDKICKTHKNADVLVPQNKPNDXCCIDVHNLNLIYLRRCLMENLTEDIEKIHEKVVGSFVRIRISSSDXKKDMYRLVQVVGTSKVAESYKTGTRTTDFKLEILNLNRKEVIPIAEISNQEFSEVKIDIILNHITFKKSLECVEELSFYSMQSLLMLLEAEILRLNHLRDRASEKGHRKEVKEYEEKLQLLNSPEERQRRLQEIPDVHSDPNLDSMFESDEDDGESDERKQDTNIFSKYLGFDRRERGSFFPRISNNVFNDAGGKTQDLPVTREHVGNICTVKNCDTAIEDSTNTVVKSEVSSVAVDISPSLIPVEIQQPLNEFLNDRSWNYQDPTGKVQGPFSMLQLYKWNVSGGFPPDLKIWRIGEKQDNSILLTDALSGKCSKNVSLPFNNPLLSLGVSTLDNKHNVQDAGKNVVKNGISADGQIIEQIKEKIVDDTSTQSDGKAEPVRSNGWLGPLHLYPSPLTTAITEKMNETSDKLRKDHGIVRNSQDNGNNGSNRTVDGQSNSGQSYQKPSDSEENAGQSSGQTWRHPNVNINSSSDCLVATSAHVSGKKTSPHKLGFDLHNSPSPPACNTSSGQTWRPPHVNSPSNCLVTTSAHASDTKTSPHKLGFDLHNPPSPPACNTSSGQTWSHPTVNSSSDCLVNTPAHVSGTKTSPHKLGFDLHNPPSPPACNTSSGQTWRHFDINISTNCLVTSSNHVSGVKTSPHKLGFDLHNPPSPPTCNTSTWQAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSIMKCGDDLTEGSKNDCLSFVADLGPMLDAGKGDALSSTGDLNLPSQPTAAEEPLRQADVHHHHQRISDEHSSRSSKVEVGTKNTSVSGNQWDSGSENSPVVPSPATLGLAIDTTWRLGLDSTPLGWSGIDQGNTNVGWGVGQTAVQETRSSNSYTSVVTPGFGDNQTRYGSDRFSVPRDRGSQGHARESGFGRSRIAFNRQPSYGVGNGGSYRPLPKGQRVCKFYESGYCKKGASCDYWHPSNSGQSYQKPSDSEENAGQSSGQTWRHPNVNINSSSDCLVATSAHVSGKKTSPHKLGFDLHNSPSPPACNTSSGQTWRPPHVNSPSNCLVTTSAHASDTKTSPHKLGFDLHNPPSPPACNTSSGQTWSHPTVNSSSDCLVNTPAHVSGTKTSPHKLGFDLHNPPSPPACNTSSGQTWRHFDINISTNCLVTSSNHVSGVKTSPHKLGFDLHNPPSPPTCNTSTWQAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSIMKCGDDLTEGSKNDCLSFVADLGPMLDAGKGDALSSTGDLNLPSQPTAAEEPLRQADVHHHHQRISDEHSSRSSKVEVGTKNTSVSGNQWDSGSENSPVVPSPATLGLAIDTTWRLGLDSTPLGWSGIDQGNTNVGWGVGQTAVQETRSSNSYTSVVTPGFGDNQTRYGSDRFSVPRDRGSQGHARESGFGRSRIAFNRQPSXGVGNGGSYRPLPKGQRVCKFYESGYCKKGASCDYWHP 1894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 1394 1426 - -
Vium3567g00008 1894 SUPERFAMILY CCCH zinc finger 1369 1394 IPR036855 GO:0046872
Vium3567g00008 1894 SUPERFAMILY FYVE/PHD zinc finger 61 116 IPR011011 -
Vium3567g00008 1894 SUPERFAMILY Plus3-like 414 512 IPR036128 GO:0003677
Vium3567g00008 1894 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 1396 1894 - -
Vium3567g00008 1894 SMART PHD_3 71 117 IPR001965 -
Vium3567g00008 1894 CDD SWIB-MDM2_like 276 351 - -
Vium3567g00008 1894 SMART rtf1 413 516 IPR004343 GO:0003677
Vium3567g00008 1894 Pfam SWIB/MDM2 domain 278 351 IPR003121 -
Vium3567g00008 1894 Coils Coil 542 562 - -
Vium3567g00008 1894 SMART c3hfinal6 1869 1894 IPR000571 GO:0046872
Vium3567g00008 1894 SMART c3hfinal6 1369 1395 IPR000571 GO:0046872
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 863 877 - -
Vium3567g00008 1894 SUPERFAMILY GYF domain 707 767 IPR035445 -
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 1684 1753 - -
Vium3567g00008 1894 Pfam GYF domain 717 758 IPR003169 GO:0005515
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 822 930 - -
Vium3567g00008 1894 ProSiteProfiles GYF domain profile. 714 768 IPR003169 GO:0005515
Vium3567g00008 1894 SMART gyf_5 715 770 IPR003169 GO:0005515
Vium3567g00008 1894 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 159 IPR013083 -
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 1313 1365 - -
Vium3567g00008 1894 CDD GYF 714 769 IPR003169 GO:0005515
Vium3567g00008 1894 ProSiteProfiles Plus3 domain profile. 413 550 IPR004343 GO:0003677
Vium3567g00008 1894 Gene3D - 414 529 IPR036128 GO:0003677
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 878 930 - -
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 1537 1566 - -
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 1730 1753 - -
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 1207 1229 - -
Vium3567g00008 1894 SMART swib_2 273 356 IPR019835 -
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 958 994 - -
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 1458 1494 - -
Vium3567g00008 1894 SUPERFAMILY SWIB/MDM2 domain 275 352 IPR036885 -
Vium3567g00008 1894 FunFam Zinc finger CCCH domain-containing protein 19 60 161 - -
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 942 1021 - -
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 1443 1521 - -
Vium3567g00008 1894 ProSiteProfiles Zinc finger C3H1-type profile. 1369 1396 IPR000571 GO:0046872
Vium3567g00008 1894 Gene3D SWIB/MDM2 domain 267 358 IPR036885 -
Vium3567g00008 1894 CDD PHD5_NSD 71 116 - -
Vium3567g00008 1894 ProSiteProfiles Zinc finger PHD-type profile. 69 135 IPR019787 -
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 1707 1729 - -
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 582 617 - -
Vium3567g00008 1894 ProSiteProfiles Zinc finger C3H1-type profile. 1869 1894 IPR000571 GO:0046872
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 1230 1253 - -
Vium3567g00008 1894 Gene3D - 716 772 IPR035445 -
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 1037 1066 - -
Vium3567g00008 1894 SUPERFAMILY CCCH zinc finger 1869 1893 IPR036855 GO:0046872
Vium3567g00008 1894 ProSitePatterns Zinc finger PHD-type signature. 72 132 IPR019786 -
Vium3567g00008 1894 Gene3D - 1369 1439 - -
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 1184 1253 - -
Vium3567g00008 1894 ProSiteProfiles SWIB/MDM2 domain profile. 270 353 IPR003121 -
Vium3567g00008 1894 MobiDBLite consensus disorder prediction 1814 1865 - -
Vium3567g00008 1894 Pfam Plus-3 domain 418 511 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3567g00008 Vium-Chr3567 36993 47496 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3567g00008 69 152 PHD Transcription Factor Family AT5G36670 33.721 2.77e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vium3567g00008 Plus-3 4.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3567g00008 - - vum:124834891 3863.92