Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3562g00003 ATGGAAGCCAGAGAAGGTATTAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCTTATCATGTGGCGCCAAGGAGTGAAGCTCCAAACCAGGTTCATGTCCCTGATGGTGGTGGTGGTGGTGGCGGCGGCATTGGTGGTACTGCAGCTATTGGTATCTCACCGGTAAGTGTGGGGTTGGATGGATCAGCAAAGAAGAAAAGAGGTAGACCAAGGAAATATGGGCCTGATGGGTCTGTCACTATGGCATTGTCACCAATGCCAATCTCGTCTTCTGCACCATCTTCTAATGATTTTTCATCTGGCAAGAGGGGGAAAATGCGGGGTATGGAGTATAAGCAGTCGAAAAAACTTGGTTTGGATTATCTAGGTGACTTGAATGCATGCTCTGATGGTACAAATTTTATGCCACACATCATCACTGTCAATGCTGGTGAGGACATTACAATGAAGGTGATATCCTTCTCTCAACAAGGGCCTAGAGCTATATGTATCTTATCTGCTAATGGTGTCATTTCAAATGTTACACTTCGACAGCCTGATTCTTCTGGGGGTACTTTAACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGACAACCAAGGTACAAGAAGCAGGTCTGGTGGAATGTCTGTCTCTCTGGCTAGCCCCGACGGCCGTGTTGTCGGTGGTGGAGTTGCCGGTCTTCTTGTAGCTGCCAGTCCTGTTCAGGTGGTGGTGGGAAGCTTTTTACCAAGCAGCCAGCAAGAGCAGAAACTAAAAAAGCCTAAGTCTACTGATTATGCAGCAGCAGCAGCAGCTATTTCTCCGGTTATTGCAGTGACTCCAACAACGGCGCCACTGCCACCGGCACCGGCGGCGAGCAATCCTGAAAAAGAGGATGTGAATATTAATGTAATGAGTGGAGCACATGTGCTGCAAAATTCAGGAAGTATTAACTCTAACCTGAGTCCTCCGAATGCCTTTAGAAGAGATAACTGGGTGAACATGCATTCTATGGCAGACTCAAGAAAGTCAGCTACTGATATTAACATATCTTTACCTGATTGTTAA 1080 0.4667 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGGGGGGIGGTAAIGISPVSVGLDGSAKKKRGRPRKYGPDGSVTMALSPMPISSSAPSSNDFSSGKRGKMRGMEYKQSKKLGLDYLGDLNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQEQKLKKPKSTDYAAAAAAISPVIAVTPTTAPLPPAPAASNPEKEDVNINVMSGAHVLQNSGSINSNLSPPNAFRRDNWVNMHSMADSRKSATDINISLPDC 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3562g00003 359 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 318 IPR039605 GO:0003680
Vium3562g00003 359 MobiDBLite consensus disorder prediction 86 104 - -
Vium3562g00003 359 Pfam Plants and Prokaryotes Conserved (PCC) domain 139 252 IPR005175 -
Vium3562g00003 359 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 257 - -
Vium3562g00003 359 Gene3D - 139 270 - -
Vium3562g00003 359 ProSiteProfiles PPC domain profile profile. 134 276 IPR005175 -
Vium3562g00003 359 MobiDBLite consensus disorder prediction 62 108 - -
Vium3562g00003 359 CDD DUF296 139 229 IPR005175 -
Vium3562g00003 359 FunFam AT-hook motif nuclear-localized protein 1-like 139 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3562g00003 Vium-Chr3562 10892 15314 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3562g00003 10 308 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 53.892 6.95e-96 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3562g00003 - - ccaj:109801852 543.888