Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3555g00009 ATGGGGAAAAATGAGTTTCTCACACCAAAAGCAATTGCCAATCGAATCAAAGCAAAAGGATTGCAGAAGCTTCGGTGGTATTGCCAGATGTGCCAGAAGCAGTGCCGAGATGAGAATGGATTTAAATGCCATTGCATGAGTGAAGGGCATCAACGTCAAATGCAAATTTTTGGACAAAACCCACACCGTATAGTTGAGGGCTATTCCGAAGAGTTTGAGAGCTCTTTTCTAGAGCACATGAAGCGCAGCCATCGATTCAGCCGTGTGGCAGCCACTGTAGTTTATAACGAATACATAAATGATAGACACCATGTTCATATGAACTCCACCCAGTGGGCAACTCTTACTGAATTTGTCAAGTACTTGGGTCGAACGGGCAAATGTAAGGTGGAGGAAACACCCAAGGGATGGTTCATTACATATATAGATAGAGATTCAGAAACCCTTTTCAAGGAGAGGATGAAGAATAAGAGAATCAAGGCAGATATGGCAGATGAAGAAAAGCAAGAAAAGGAGATCAGAAAACAAATTGAAATGGCTGAGCAAATGATGCAGCAGCCTACTCCTGAGGCTGATCAGCCACAATCTGAGCCTCCAAGGGAACTAAATATGGAAGATGGAATTAAGATAGGGTTTTCTCTTGGGTCTTCATTGGTTAAACAACCTGTGACTAAGGAAAAACGTGAGGCATCAAGGGTGGTGTTTGAGGAGGCTGATGAAGAGAAATATGGGGAAAGAAATCCTGGAAACAATTTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAACTTTGGAGGAAATGATGAGGGATGAAGAGAAGAAAAAGGAAAAAATCAACCGGAAGGATTACTGGTTGCACGAGGGAATTGTTGTTAAGGTTATGAGCAAAGTTTTGGCAGAGAAGGGCTACTACAAGCAAAAGGGTGTTGTGCGGAAGGTGATTGACAAGTATGTTGGAGAAATAGAAATGCTTGAAAATAAGCATGTGCTCAAAGTTGATCAGGCAGAGCTTGAAACTGTGATTCCACAAGTTGGTGGCCGTGTAAAAATTGTCAACGGCGCGTATAGAGGATCAATTGCTAAGTTGTTGGGCGTGGATACAAATAATTTTTGTGCTAAGGTGCAGATCGAGAAAGGACCCTATGATGGCAGAGTGCTTAAAGCTATGGAATACGAGGACATTTGTAAAGTAGCCTAG 1197 0.4236 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPHRIVEGYSEEFESSFLEHMKRSHRFSRVAATVVYNEYINDRHHVHMNSTQWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIKADMADEEKQEKEIRKQIEMAEQMMQQPTPEADQPQSEPPRELNMEDGIKIGFSLGSSLVKQPVTKEKREASRVVFEEADEEKYGERNPGNNLKRKESGGGKSTLEEMMRDEEKKKEKINRKDYWLHEGIVVKVMSKVLAEKGYYKQKGVVRKVIDKYVGEIEMLENKHVLKVDQAELETVIPQVGGRVKIVNGAYRGSIAKLLGVDTNNFCAKVQIEKGPYDGRVLKAMEYEDICKVA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3555g00009 398 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 398 IPR037321 -
Vium3555g00009 398 MobiDBLite consensus disorder prediction 236 273 - -
Vium3555g00009 398 Gene3D - 288 341 - -
Vium3555g00009 398 FunFam DNA/RNA-binding protein KIN17, putative 342 398 - -
Vium3555g00009 398 Pfam KN17 SH3-like C-terminal domain 280 333 IPR041330 -
Vium3555g00009 398 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
Vium3555g00009 398 MobiDBLite consensus disorder prediction 184 203 - -
Vium3555g00009 398 Coils Coil 154 186 - -
Vium3555g00009 398 SMART Kin17_mid_2 52 178 IPR019447 -
Vium3555g00009 398 Coils Coil 261 281 - -
Vium3555g00009 398 Gene3D - 342 398 IPR014722 -
Vium3555g00009 398 FunFam DNA/RNA-binding protein kin17-like 288 341 - -
Vium3555g00009 398 CDD KOW_KIN17 344 397 IPR041995 -
Vium3555g00009 398 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Vium3555g00009 398 Gene3D - 60 160 IPR038254 -
Vium3555g00009 398 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3555g00009 Vium-Chr3555 81471 83534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3555g00009 1 398 C2H2 Transcription Factor Family AT1G55460 68.421 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3555g00009 K13102 - gmx:100785931 744.962