Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3553g00002 ATGGCTACTCAAAACACAACCTTCGAACTTGTCATGAAAGATGTTGTTCTTATCAAACCATCAAAACCAACACCTTCCTCTATTCTTCCTTTATCTACCCTAGACAATATACCTTTCAATAATAGCCTATGCCACACCCTTCATGTATTTCGATCCAAAACTCATGATCTTGATGAACCGGGTTGCCCAAATCACCAACTGCTAGATCTTGCTGATGTGATTAAAGCAGCAATTTCAAAGGCTTTATTCTATTATTATCCTCTAGCAGGTAGGCTAGTAAAGCACACTGATGGAAACTTCATGATCAACTGCAGTGCAGAAGGTGTTCCGTTCTTGGAGGCCAGTGCCAGTTGCAATCTTTCTTCTCTCCATTTCTGGGACGGCACTGACATGCAAAATGCAAAACACTTAGTGTTTGACCTTCCTTCTCAAAGTGAAAGTGGCTACCAATATCCCTTGGTGTTCAAGGTGACAACCTTTACTTGTGGAGGATTCACCATTGGAATGGGGATGTTACATACTATTGGAGATGGCATTGGAGCATCTCAGATCTTAAAAGCCATCATAGAGCTTGCAAGGGGGAAAAGTGAGCCCTCTGTGAAGCCTGTGTGGGAGAGAGAGAGGCTGAAGGGATCAATCACTAAACAGCCATTGCTATTTGATTCAGTGGATGAGGCCTCAGCTGCTGTTTCACCCTTTCTTCCAACCGAAATTCTCGTGCAGGAATGCATTAAGGTTAACAGTGAAAGCATCAGAAGACTGAAGATGAGTTTGATGAAGGAATCAGGTGAAAACGAAAACTTCACTACTTTTGAATCACTAGCTGCATATGTGTGGAGGTCTAAATCAAGGGCCTTAAAATTGAACTGTGATGGGAAAGTTAAGCTGACTATCACAGTTGGAGTGAGAAGGCACTTGCAGGATCCTTTGCCTGAAGGGTATTATGGAAATGCTATTGTGGATACTGACGTTGTTTTAACAGTGAGGGAACTGAATGAAAGGCCACTACATGAGATCGTGAAGCTCATAAAAGAAAGCAAGAAAGTTGCTAGTAACAGTGATTATGTGAGAAACTTCATCAACACTTTAGAGACAGAAGTAACGTATTTCAATATTGAAGGGAGTGGTGCATATACTGTGTTGACTGATTGGAGGTACTTGGGGTTCTTGGAAAAGATAGATTGTGGAGTTAAAGAACTTGTGAATACTTTACCAGTCGCTTCTGACATGTTTGGATCCGTTGATTTATGCATTTTCTCATCTCTTTGCAACTTGGATTCTTCAATGGAGGGAGGGGTTAGCATTTTTCAGTCCCTACCAGCTGCTGCATTGCTCAAGTTCAAGGAGGAGATGGAAGCTCTCAGCCTTTTGATTTGA 1377 0.4183 MATQNTTFELVMKDVVLIKPSKPTPSSILPLSTLDNIPFNNSLCHTLHVFRSKTHDLDEPGCPNHQLLDLADVIKAAISKALFYYYPLAGRLVKHTDGNFMINCSAEGVPFLEASASCNLSSLHFWDGTDMQNAKHLVFDLPSQSESGYQYPLVFKVTTFTCGGFTIGMGMLHTIGDGIGASQILKAIIELARGKSEPSVKPVWERERLKGSITKQPLLFDSVDEASAAVSPFLPTEILVQECIKVNSESIRRLKMSLMKESGENENFTTFESLAAYVWRSKSRALKLNCDGKVKLTITVGVRRHLQDPLPEGYYGNAIVDTDVVLTVRELNERPLHEIVKLIKESKKVASNSDYVRNFINTLETEVTYFNIEGSGAYTVLTDWRYLGFLEKIDCGVKELVNTLPVASDMFGSVDLCIFSSLCNLDSSMEGGVSIFQSLPAAALLKFKEEMEALSLLI 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3553g00002 458 Gene3D - 6 219 IPR023213 -
Vium3553g00002 458 Gene3D - 235 451 IPR023213 -
Vium3553g00002 458 Pfam Transferase family 16 453 - -
Vium3553g00002 458 PANTHER ACYL TRANSFERASE 4 10 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3553g00002 Vium-Chr3553 13156 14779 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3553g00002 73 366 Monolignol Biosynthesis Gene Families AT5G48930 30.233 1.51e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3553g00002 K20240 - gmx:100783730 503.056