Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3552g00006 ATGGTGGCGGCTGCGGCGGCCAACAAATCCCTTTTAAAGGAGCCTCGGTACCGAGGCGTGAGAAAGAGACCGTGGGGGAGGTTTGCGGCGGAGATCAGAGACCCGTTGAAGAAAGCCAGGGTTTGGTTAGGAACCTTCGATTTTGTCGAGGAAGCTGCTCAAGCCTAAGACGCCGCCGCACGGACTCTCCGGGGTCCCAAGGCCAAAACAAATTTCCCTCTTTCACACCCTTTCTACATCGTCTCCTCGTCGTTCCGCCCTCCCCTGCCTTTTGATCTCAACGCGCCACCGTTCGACGATGCCGCTGCCGATGACGATCTCCGCTGCACCGCGCTCTGCCTCCTGAACGTGCCGTGA 357 0.591 MVAAAAANKSLLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDFVEEAAQAXDAAARTLRGPKAKTNFPLSHPFYIVSSSFRPPLPFDLNAPPFDDAAADDDLRCTALCLLNVP 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3552g00006 118 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Vium3552g00006 118 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Vium3552g00006 118 FunFam Ethylene-responsive transcription factor 2 16 74 - -
Vium3552g00006 118 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Vium3552g00006 118 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 86 - -
Vium3552g00006 118 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Vium3552g00006 118 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Vium3552g00006 118 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Vium3552g00006 118 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Vium3552g00006 118 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3552g00006 Vium-Chr3552 44363 45231 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3552g00006 12 74 AP2-EREBP Transcription Factor Family AT3G20310 82.540 7.56e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium3552g00006 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3552g00006 K09286 - gmx:100803943 123.635