Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3552g00004 ATGGTGAGCATTCAATCTCGATACACTGTCTTTCCCTCAGAAACCACCCCCAACGAAACCCTCTTCTCCCTGTGCGAGCAAATCAAGCTTCGCACTCATGCGCCACTCCTTTACGTGTTCAAGCCACACCCTCGTCACGATGCATCAACTTTTGTCAACGCTCTTAGGCACTCTCTAAGCCAGGCCTTGACAATCTATTACCCAGTTGCGGGTAGGTTGCGTTGGATCCAAGGGGGGCGATGGGAGCTTCACTGCAATGCCAAGGGTGCCCAACTCCTGGAAGCCATTTGCAAAGATGTGACTTTGGATGATTTGGATGATTTTGTGCCTACCCATTTGGTGTCACAGCTCATACCAAACATTGATTATGACGTTCCCATTGAGGACACGCCGTTGTTGGTTGCGCAGCTTACGAGGTTCCCCTGTGGTGGCGTTACCATTGGGGTGGCCTTGTGTAGAGGGGCCATCGACGGAATCGCAACCATGCGGTTCATGAACACGTGGGCCAAGTTGGCTCGGGGAGAGAACATGGAAACGGCACCGTGCCATGATCGAAATGTTTTGAATTCGTACAAGGCTCATTCGGGGTTGCACGATCATTCGGAGTTTCACCCTCCTCCTCCTTGGTTAGGTCCATTGGGGAAAGACAGCAAGGTGGCGGTTGCAATAGTGAAGCTGACGGGTGAACAAGTGAAGAAGCTCAAGCACAAGGGGAATTCTGGATCTGGTTCACAACGTTATTCAACGTTTGAGGTTATTTCAGGGCACTTGTGGAGGTGTGTGAGTAAGGCACGTTATGCAGGGAAAAGGGAGCAACCTACGAGGTTGAGCACTTTGGTTAATTGTAGGCACCGAATGAAGCCACCTCTTCCAGAAGATTACGCAGGGAACACAGCATTTCCTACAGTGACAACAAGCTCTTTTGGTGAAATCATGCAGAGGCCATTGAGTTATGCGGTCGGGAACGTGAGGGCGGCGCTTGAAAGAGTGACGGGGGAGTTTGTGGAGTCTGCACTTGATCACATAGATAGGGAAAAAGACATGAATTTGATTAGGTATAACTTTCACTACCCTGCCCCAAGTGTTCATAAGGGAGCATACAAGGGGAACCCGAATCTTTTTGTTGTGAGTTGGATGAATTTCTCTTTCAAGGATGCCGATTTTGGATGGGGAGAACCCGTGTATTTTGGCCCTGGGTACATGGATTCTGAAGGAAAAGCATTTCTTTTGAATGACGCTAATGGGGATGGAATCATTGTGGCCATTTCCCTCGAAGCATCTCACATGGATGCTTTCAAGAGGATTTTTTATCGTGATATCGAGCAGGAATCTCTCATTTCCAAACTGTGA 1350 0.4889 MVSIQSRYTVFPSETTPNETLFSLCEQIKLRTHAPLLYVFKPHPRHDASTFVNALRHSLSQALTIYYPVAGRLRWIQGGRWELHCNAKGAQLLEAICKDVTLDDLDDFVPTHLVSQLIPNIDYDVPIEDTPLLVAQLTRFPCGGVTIGVALCRGAIDGIATMRFMNTWAKLARGENMETAPCHDRNVLNSYKAHSGLHDHSEFHPPPPWLGPLGKDSKVAVAIVKLTGEQVKKLKHKGNSGSGSQRYSTFEVISGHLWRCVSKARYAGKREQPTRLSTLVNCRHRMKPPLPEDYAGNTAFPTVTTSSFGEIMQRPLSYAVGNVRAALERVTGEFVESALDHIDREKDMNLIRYNFHYPAPSVHKGAYKGNPNLFVVSWMNFSFKDADFGWGEPVYFGPGYMDSEGKAFLLNDANGDGIIVAISLEASHMDAFKRIFYRDIEQESLISKL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3552g00004 449 Gene3D - 211 438 IPR023213 -
Vium3552g00004 449 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 436 - -
Vium3552g00004 449 Pfam Transferase family 1 437 - -
Vium3552g00004 449 Gene3D - 1 205 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3552g00004 Vium-Chr3552 23305 24906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3552g00004 2 438 Monolignol Biosynthesis Gene Families AT5G48930 34.382 1.94e-85 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3552g00004 K13065 - gmx:100775549 701.049