Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3552g00002 ATGAATTCTTCCGACTATGAAACCACTGATTCCATTATCATAGACTCGAACAACACGCGGAAGGTCTGTTTCAATAAGTCTATCTATCCCGGTTCAGCCCTTTGGCTGGAAAATTCTCTGGAGGAAACGCTTCCTTCATTTGTCCTGCAATTCGCCATCATCCTAGCTCTCAACCGCTTTCTGTTCGTTCTTGCAGAACAATGCCATGTACCTCGCATTGTTGCCAATATTTTTACTGGTTTTCTGTTAGGTACATCTGTCATGGGACGTTGGAAAGTTTTCATGGACCAGTTATTTCCTTACAGCAACATGATACCATTGGAGACGGTAGGATCGTTGGCCCTTGTTTACTACGTGTTTTTGGTGGGCTTAGAGATAGACTTGAATCCAATAAAGACGTTGAACAGAAAGACCAAAGTTATAGCCATTGCAAGCACCATCTTCCCCATACCAATAGGGTTTGGCTTGTACTACATGCTTGTCACGGACATGGGGCGAAAACATTTGTCCAGTGACAACGTTAGACCAAAGGGTGCAATATTATGGGGTCTCGCCCTTTCTTGCAGCAGTGAGTTCCCTGAGATTGCAAAGATCCTTTCAGATCTGAAGCTGCTTCTCACGGAGAACGGACAACTGGCTCTCACAGCTTCTCTCCTGAACGACTTGATTTCATGGACTCTTCTTGTGTTGGCCCTGTCACAATTCTATCACGCTTCTGTGGTATCGTTTGTCATCACTGTGGTGATTCTGTTGTTGTGTTTTCTGGCACTTCACCCCCTTTTCAAGTGGATATTCAACAATGTAGGAATGGCCGATAAAGAGTTCTTGGAGTCACAAGTCATATTTGTGCTGAATGTGGTTTTGGTTGTTGGCTTGTTAACTGATGGTCTGGGCGTGCTTTCGATAACGGGGGCTTTCTTTTTGGGTGTTGTGATGCCTCAGGGGTCGCTTAACAATGCGGTGCAGGACAAGGTGCAGGATTTTGTGGCTGTGCTGATGATGCCTTTGTTCTTTGTGATAGTTGGAGAGAGGATTAGGATCCAAGACTTTGCCTTGCAGACACATTGGACAACTGTGTTTGTGGTGGTTCTGTTGGCCATGGTGACCAAGATTGTGTGCACTATGGCTGTCACTTGGTTCTACCGGATGCCGCACATGGAAGGATTCTCCCTTGCACTGCTCATGAACACTAAAGGAATAATGCCACTGATCATTCTCTGCACCGGCAGGGACAGACATGAACTGGACAACCAAACCTTTGGGGTGATGGTGTTGGCGTGCTTGTTAATGACAATCCCCGTGGGACCTGTCTCGTCAGCTTTAACAAATGCATTGAAAAGCAGAATGGTTATGGGAAGCTTACGCAGGACGCATGAAACACAACCAGACTCACCACTCAAACTACTGGCCTGCATCCACGCAAAGCGCGATGCCAACGTGATTATCGACCTCTTAAAAGCCTCGTGTCCCTCTGTGAGAAACCCAATCCAACTTCTAGCAGTGGAACTGAACAAAACAACCAATCGCCCCGCCGCGTCACTCATCATAAGGAACGCTCGAAACACATCCTTCACCTCGAGATCCTTGAAGCTAGGCTCCGAAGACACCCTCGGAAGCTTCGACAATCTCAGCCAAGCCATCTTCGCAGAGAAAATGAGTATAATGTCAGACTACAATACCATGCACCAGGACATCATCAACCTCGCAAGACACAGAGGTGTGACACTTATCTTATCCACATTCCACAAGCAACCAACCTACGATGGTTTAGGAGCAGGAGCTGCAACCGCAAGAGCTGTCAACATCATCAACCGCGACCATGCAAGCAAAGACGAGAAGAAAGTGGTGTTAGAGAGTCTAGTTAAGGCTGCACCGTGTTGTTTGGCCATATTAGTGGACAGAGGGGTGAGTCGTAAGCGTTCGAAGGAGCTACGAGTGGGTATGTTCTACGTTGGTGGTGCTGATGACCGTGAAGCTCTATCTTATGCATGGAGGATGACTAGGAGTTCAGAGGTGAATTTAACGTTAGTGAGGCTTGTTTGGGAGAACCCTAATGACGAGTTTGATGAAACGGATAAGGAGTTTCTGAAGGGGTTTATGAAACAGATGGGGGATTCGGGAAAGGTGAGGTATTTGGAGAAGGTGGTGAGTGATGAGAAGAAAACAGTGAAGCTTTTGAACAAGATAGCGAAAAAAGGGTTTGATTTGTTTGTTATAGGAAGAGGGCATGGGAGGAAGATGTCATTGGCACAAACGGTGGATCCTGTGTTGGAGGAGGCTGTGTTGGGGCCTCTTGGGGATGCTTTGACGGATCTGAACTCTGCGGCTGAAACCTCCATTTTGATATTCCAAAGACAGGGTGAACAAGTTGATGGGAAGCATGTGAGGTCCGCATCATCTCCTGACGGAAAACTGTTTACTTGCATGATGGAGCAGATGTTAATGTGCCCTTCAACCAGGTCTACTGTCATTTTACCTCAGTCCACCTGA 2490 0.4683 MNSSDYETTDSIIIDSNNTRKVCFNKSIYPGSALWLENSLEETLPSFVLQFAIILALNRFLFVLAEQCHVPRIVANIFTGFLLGTSVMGRWKVFMDQLFPYSNMIPLETVGSLALVYYVFLVGLEIDLNPIKTLNRKTKVIAIASTIFPIPIGFGLYYMLVTDMGRKHLSSDNVRPKGAILWGLALSCSSEFPEIAKILSDLKLLLTENGQLALTASLLNDLISWTLLVLALSQFYHASVVSFVITVVILLLCFLALHPLFKWIFNNVGMADKEFLESQVIFVLNVVLVVGLLTDGLGVLSITGAFFLGVVMPQGSLNNAVQDKVQDFVAVLMMPLFFVIVGERIRIQDFALQTHWTTVFVVVLLAMVTKIVCTMAVTWFYRMPHMEGFSLALLMNTKGIMPLIILCTGRDRHELDNQTFGVMVLACLLMTIPVGPVSSALTNALKSRMVMGSLRRTHETQPDSPLKLLACIHAKRDANVIIDLLKASCPSVRNPIQLLAVELNKTTNRPAASLIIRNARNTSFTSRSLKLGSEDTLGSFDNLSQAIFAEKMSIMSDYNTMHQDIINLARHRGVTLILSTFHKQPTYDGLGAGAATARAVNIINRDHASKDEKKVVLESLVKAAPCCLAILVDRGVSRKRSKELRVGMFYVGGADDREALSYAWRMTRSSEVNLTLVRLVWENPNDEFDETDKEFLKGFMKQMGDSGKVRYLEKVVSDEKKTVKLLNKIAKKGFDLFVIGRGHGRKMSLAQTVDPVLEEAVLGPLGDALTDLNSAAETSILIFQRQGEQVDGKHVRSASSPDGKLFTCMMEQMLMCPSTRSTVILPQST 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3552g00002 829 PANTHER CATION/H + ANTIPORTER 22 787 - -
Vium3552g00002 829 Pfam Sodium/hydrogen exchanger family 53 432 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vium3552g00002 829 Gene3D - 45 449 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3552g00002 Vium-Chr3552 10250 13573 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3552g00002 1 785 Antiporter Super Family AT2G13620 31.917 1.11e-131 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3552g00002 K26731 - gmx:100780176 1176.39