Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3550g00023 AAAATTGATTGCAATAATATTTCTTTGGTGACTGTATTGTGCCTTTTAATACAGGATGTGATGTTTGGAGGGACGGAAACCGTGGCATCAGCGATTGAGTGGGCCATGGCGGAGCTAATGAGAAGCCCAGAAGACCAAAAGAGGGTCCAACAGGAGCTCGCGGATGTAGTGGGCCTTGACCGTCGGGTCGAAGAGTCCGATTTTGAGAAACTCACGTTCCTAAAATGTGCCCTTAAAGAGACCCTACGCCTCCACCCTCCGATCCCGCTCCTCCTCCACGAGACGGCCGAGGAAGCGACGGTCAGCGGCTACTTCATTCCCAAGAAAGCGCGCGTGATGATCAACGCGTGGGCAATTGGGAGAGACAAAAACTCATGGGAGGAACCCGACTCATTCAAACCCGCCAGATTTTTGGAACCGGGCGTGCCCGACTTCAAGGGTAGCAACTTCGAGTTCATTCCTTTCGGGTCGGGTCGCAGGTCCTGCCCCGGGATGCAGTTGGGGCTGTACGCGCTTGAATTGGCGGTGGCTCACCTCCTTCACTGCTTCACGTGGGAATTGCCAGATGGAATGAAACCCAGTGAGTTGGACATGGGTGACATTTTCGGACTCACCGCTCCAAAAGCCACGCGACTCATCGCTGTGCCAACCAAGCGCGTGGTGTGCCCTCTCTTTTAG 678 0.5428 KIDCNNISLVTVLCLLIQDVMFGGTETVASAIEWAMAELMRSPEDQKRVQQELADVVGLDRRVEESDFEKLTFLKCALKETLRLHPPIPLLLHETAEEATVSGYFIPKKARVMINAWAIGRDKNSWEEPDSFKPARFLEPGVPDFKGSNFEFIPFGSGRRSCPGMQLGLYALELAVAHLLHCFTWELPDGMKPSELDMGDIFGLTAPKATRLIAVPTKRVVCPLF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3550g00023 225 Gene3D Cytochrome P450 5 214 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00023 225 FunFam Predicted protein 21 214 - -
Vium3550g00023 225 Pfam Cytochrome P450 17 208 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00023 225 SUPERFAMILY Cytochrome P450 13 219 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00023 225 PANTHER CYTOCHROME P450 84A1-RELATED 15 224 - -
Vium3550g00023 225 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 155 164 IPR017972 GO:0005506|GO:0016705
Vium3550g00023 225 PRINTS P450 superfamily signature 76 87 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00023 225 PRINTS P450 superfamily signature 153 162 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00023 225 PRINTS P450 superfamily signature 162 173 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00023 225 PRINTS P450 superfamily signature 23 40 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00023 225 PRINTS E-class P450 group I signature 162 185 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00023 225 PRINTS E-class P450 group I signature 32 58 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00023 225 PRINTS E-class P450 group I signature 12 29 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00023 225 PRINTS E-class P450 group I signature 75 93 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00023 225 PRINTS E-class P450 group I signature 152 162 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00023 225 PRINTS E-class P450 group I signature 115 139 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3550g00023 Vium-Chr3550 240228 241106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3550g00023 16 224 Monolignol Biosynthesis Gene Families AT4G36220 82.775 4.77e-132 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3550g00023 K09755 - vum:124834824 454.136