Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3550g00022 ATGGATTGGTTCCTAAAATCATCGGAAGCCATGTCCAACCTTAATCCATTCAACATCACCATCTTACTCATCCTCACACTAACAACACTTCTTTTCGTTTTGCTACATCGTACTCGTCCAAGAGCACCGTATCCACCGGGACCAAAGGGTTTGCCCATCATAGGAAACATGTTGATGATGGACCAGTTAACCCACCGCGGTCTTGCCACCCTCGCCAAGCAATTCGGCGGCGTTTTCCACCTCCGCATGGGCTTCCTCCACATGATAGCCATCTCCGACCCCGACGCGGCACGTCAGGTTCTCCAAGTCCAAGATAATATCTTCTCCAATCGCCCCGCCACCATCGCCATCAGCTACCTCACCTACGACCGCGCCGACATGGCCTTCGCACACTACGGCCCCTTCTGGCGCCAGATGCGCAAGCTCTGCGTCATGAAACTCTTCAGCCGAAAGCGCGCCGAGTCCTGGCAATCCGTGCGCGACGAGGTCGACGGTGCAGTCCGCTCCGTCGCGGCTTCCGCCGGAAAAGCCATCAACGTCGGCGAGCTCGTGTTCAACCTGACGAAAAACATCATCTACCGAGCGGCCTTTGGGTCGAGCTCCCAGGAGGGACAGGAAGAGTTCATTGGGATTCTGCAGGAGTTTTCGAAACTCTTTGGCGCTTTCAACATCGCGGATTTTATACCCTACCTCGGGCGCGTGGACCCGCAGGGGCTCAACGCGCGCCTTGCTAGGGCTCGCGGCGCGTTGGATAGCTTCATAGATAAGATCATTGATGAGCACGTAGAGAAGAAGAAGAATGGGAAGGGTGTCTGTGATGGAGAAACGGACATGGTGGATGAGTTGCTCGCATTCTACACCGAAGAGGCCAAGTTGAACAATGAACCTGAAGATTTGCAGAACTCTATCAGACTCACTAAGGATAACATCAAAGCTATCATTATGGATGTGATGTTTGGAGGGACGGAAACCGTGGCATCAGCGATTGAGTGGGCCATGGCGGAGCTAATGAGAAGCCCAGAAGACCAAAAGAGGGTCCAACAGGAGCTCGCGGATGTAGTGGGCCTTGACCGTCGGGTCGAAGAGTCCGATTTTGAGAAACTCACGTTCCTAAAATGTGCCCTTAAAGAGACCCTACGCCTCCACCCTCCGATCCCGCTCCTCCTCCACGAGACGGCCGAGGAAGCGACGGTCAGCGGCTACTTCATTCCCAAGAAAGCGCGCGTGATGATCAACGCGTGGGCAATTGGGAGAGACAAAAACTCATGGGAGGAACCCGACTCATTCAAACCCGCCAGGTTTTTGGAACCGGGCGTGCCCGACTTCAAGGGTAGCAACTTCGAGTTCATTCCTTTCGGGTCGGGTCGCAGGTCCTGCCCCGGGATGCAGTTGGGGCTGTACGCGCTTGAATTGGCGGTGGCTCACCTCCTTCACTGCTTCACGTGGGAATTGCCAGATGGAATGAAACCCAGTGAGTTGGACATGGGTGACATTTTCGGACTCACCGCTCCAAAAGCCACGCGACTCATCGCTGTGCCAACCAAGCGCGTGGTGTGCCCTCTCTTTTAG 1569 0.5494 MDWFLKSSEAMSNLNPFNITILLILTLTTLLFVLLHRTRPRAPYPPGPKGLPIIGNMLMMDQLTHRGLATLAKQFGGVFHLRMGFLHMIAISDPDAARQVLQVQDNIFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWQSVRDEVDGAVRSVAASAGKAINVGELVFNLTKNIIYRAAFGSSSQEGQEEFIGILQEFSKLFGAFNIADFIPYLGRVDPQGLNARLARARGALDSFIDKIIDEHVEKKKNGKGVCDGETDMVDELLAFYTEEAKLNNEPEDLQNSIRLTKDNIKAIIMDVMFGGTETVASAIEWAMAELMRSPEDQKRVQQELADVVGLDRRVEESDFEKLTFLKCALKETLRLHPPIPLLLHETAEEATVSGYFIPKKARVMINAWAIGRDKNSWEEPDSFKPARFLEPGVPDFKGSNFEFIPFGSGRRSCPGMQLGLYALELAVAHLLHCFTWELPDGMKPSELDMGDIFGLTAPKATRLIAVPTKRVVCPLF 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3550g00022 522 SUPERFAMILY Cytochrome P450 45 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00022 522 PRINTS E-class P450 group I signature 412 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00022 522 PRINTS E-class P450 group I signature 459 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00022 522 PRINTS E-class P450 group I signature 96 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00022 522 PRINTS E-class P450 group I signature 187 205 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00022 522 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00022 522 PRINTS E-class P450 group I signature 449 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00022 522 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00022 522 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00022 522 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00022 522 PANTHER CYTOCHROME P450 84A1-RELATED 20 521 - -
Vium3550g00022 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 452 461 IPR017972 GO:0005506|GO:0016705
Vium3550g00022 522 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00022 522 PRINTS P450 superfamily signature 459 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00022 522 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00022 522 PRINTS P450 superfamily signature 450 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00022 522 CDD CYP71-like 76 509 - -
Vium3550g00022 522 FunFam Cytochrome P450 84A1 37 515 - -
Vium3550g00022 522 Pfam Cytochrome P450 45 505 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3550g00022 522 Gene3D Cytochrome P450 37 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3550g00022 Vium-Chr3550 232454 235855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3550g00022 8 521 Monolignol Biosynthesis Gene Families AT4G36220 74.662 0.0 784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3550g00022 K09755 - gmx:100793538 899.812