Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3550g00019 ATGGAGTGCATGGAGGCAGCTTTGAAAAGCAATTTGAGGAAAGAAATGATGGTACAACTCAGTCCAGAAACTTTCATGGAGGAGTTCAGTGTGCAAAACGGAACCACTTGCGACGACTTTTTCGTCGACGACCTCCTTGACTTCTCGCACGTGGATGAAGAACCAGAACAACAGCACAAGGAACAACAAGACTCGGTTTCTATATCCCTTCAGAAAGAAAACCCAAGCCAAGAGCCCTATGCTTTCAAAGACGATTATTCCTCTGTGCCCACCACCGAGCTTAGCGTTCTGGCGGATGACGTGGCGGACTTCGAATGGTTGTCTCATTTCGTGGAGGATTCCTTCTCGGAATTCTCTGCGGTGCTCCCCACCGTAACGGAGGCCAACCCAACGGGCCATGCGGCGAAAGAGCCGAAGCCAGAACCGGAAAACCCGATTTTCACCTTCAAAACCCCGGTTCAGACCAAGGCGAGAAGCAAGCGAAGCAGGAACGGTGTTCGTGTTTGGCCACTCGGTTCCCCTTCCTTCACAGAATCTTCCTCGAGCTCCACCACCACCACTTCATCGTCTTCCTCCTCCTCCCCCTCCAGCCCCTTGCTAATTTACACCAACTTCCCCCGTAGCCTCGACCACGTCAGCTCCGAGCCCAAACCAAATAAACCGAAGAAAAAACACACTTCCGACAGTGCGGGCACTCTGGCGCCGCGACGGTGTAGTCACTGCGGCGTGCAGAAAACCCCTCAGTGGCGAACCGGGCCCCTCGGCCCAAAAACACTCTGTAACGCATGCGGGGTACGGTTCAAGTCGGGACGGCTCTTACCCGAATATAGGCCCGCTTGCAGCCCAACATTCTCCAGCGAATTGCACTCAAACCATCATCGTAAAGTACTGGAGATGCGACAGAAGAAGGAGATGATGACTGAGATTGAAAATGGTTTTACCCCTGCTCCCGTTCCCAAATTTTGA 966 0.529 MECMEAALKSNLRKEMMVQLSPETFMEEFSVQNGTTCDDFFVDDLLDFSHVDEEPEQQHKEQQDSVSISLQKENPSQEPYAFKDDYSSVPTTELSVLADDVADFEWLSHFVEDSFSEFSAVLPTVTEANPTGHAAKEPKPEPENPIFTFKTPVQTKARSKRSRNGVRVWPLGSPSFTESSSSSTTTTSSSSSSSPSSPLLIYTNFPRSLDHVSSEPKPNKPKKKHTSDSAGTLAPRRCSHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEMMTEIENGFTPAPVPKF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3550g00019 321 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 294 - -
Vium3550g00019 321 CDD ZnF_GATA 237 285 IPR000679 GO:0006355|GO:0043565
Vium3550g00019 321 ProSitePatterns GATA-type zinc finger domain. 238 263 IPR000679 GO:0006355|GO:0043565
Vium3550g00019 321 Gene3D - 231 307 IPR013088 GO:0006355|GO:0008270
Vium3550g00019 321 FunFam GATA transcription factor 227 312 - -
Vium3550g00019 321 MobiDBLite consensus disorder prediction 129 237 - -
Vium3550g00019 321 Pfam GATA zinc finger 238 272 IPR000679 GO:0006355|GO:0043565
Vium3550g00019 321 MobiDBLite consensus disorder prediction 213 230 - -
Vium3550g00019 321 ProSiteProfiles GATA-type zinc finger domain profile. 232 268 IPR000679 GO:0006355|GO:0043565
Vium3550g00019 321 SMART GATA_3 232 286 IPR000679 GO:0006355|GO:0043565
Vium3550g00019 321 MobiDBLite consensus disorder prediction 173 210 - -
Vium3550g00019 321 PIRSF Txn_fac_GATA_plant 1 318 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vium3550g00019 321 PANTHER GATA TRANSCRIPTION FACTOR 33 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3550g00019 Vium-Chr3550 188111 189796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3550g00019 5 321 C2C2-Gata Transcription Factor Family AT5G66320 47.727 6.71e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium3550g00019 GATA 1.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3550g00019 - - var:108335072 600.897