Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3550g00016 ATGGGTCGCGGCAAAATTGAGATAAAGTTGATTGAGAACCCCACCAACAGGCAAGTCACCTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCCAAGGTTTCACTCATCATGTTCTCAAAAAACAACAAGATGCATGAATATATTAGTCCTGGCCTTACCACAAAAAAGATCGTTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCCCACTATGAGAAAATGCTTGAGAACTTGAAGAAGCTGAAAGATATTAACAACAAACTCAGGAGACAGATCAGGCACAGGATTGGTGAGGGTTTGGATTTGGACGAGCTGAGCTTCCAGCAACTGCGAACTCTTGAAGAGGATATGGTTTCTTCCATAGGGAAAATCCGCGAGCGAAAGTTCCACGTGATCAAAACTCGGACTGACACCTGCAGGAAAAAGGTTAAAAGCTTGGAGCAGATGAATGGAAATCTTCTGCTTGAACTTGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGACGAGGAATCAGCAGTTGCACTGGCCAATGGTGCCTCCACCCTCTATGCATTCTGTCAGCACCATACTCATCTGAATCTTCCCTCACATCATCAACATCACCACCATGGAGAAGAACCCTTTAAAACTGACGATCTACGCCTTGCTTAA 708 0.4421 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKIVDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGLDLDELSFQQLRTLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVKSLEQMNGNLLLELEKCVIHPQFLLHDEGDEESAVALANGASTLYAFCQHHTHLNLPSHHQHHHHGEEPFKTDDLRLA 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3550g00016 235 Coils Coil 85 105 - -
Vium3550g00016 235 MobiDBLite consensus disorder prediction 214 235 - -
Vium3550g00016 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 205 - -
Vium3550g00016 235 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium3550g00016 235 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Vium3550g00016 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Vium3550g00016 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium3550g00016 235 MobiDBLite consensus disorder prediction 218 235 - -
Vium3550g00016 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium3550g00016 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium3550g00016 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium3550g00016 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium3550g00016 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium3550g00016 235 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium3550g00016 235 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Vium3550g00016 235 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3550g00016 Vium-Chr3550 168360 171048 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3550g00016 1 223 MADS-box Gene Family AT3G54340 50.893 5.66e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium3550g00016 K-box 8.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3550g00016 K09264 - gmx:100784496 399.053