Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3550g00003 ATGTTGCCCGAACGAGCTAATCTGCACATAGCCTTAACCTTTTTGCAATTTTGTTATGCAGGAAATCATATATTTCTGAGAATTGCACTTGATACAGGAGTAAGCAAGCTTATATTTCCTGTCTTTAGAAACATCACCGCCTTGGTTCTTCTGGGTCCACTCGCGTATTTTTCAGAGAAGAAAGATAGGCCATCAATAACCACTTACTGTGTGGTACACTTTTTCCTACTTGGACTTGTTGGAATAACAATGAAAGAAGGATTCTACCTCTTGGGTTTGGAGAAAACTTCACCTACGTTTGCCGCTGCTATGCAGAATTCAGTTCCTGCCCTCACTTTTCTGATGGCTGCACTACTCAGATATGAGAGCGTTCACTTCAATAGAATTGATGGTGTGGCTAAGGTCCTTGGTGTCCTTGCTTCTGTTGGTGGAGCTACAATCATTACCCTTTACAAGGGACCTGTTATTTATTCTCCGCGTTTAGGATTTAATCAGGAACAATACTTGACCATGATGGGGGATACCCCAGGAAAGGACTGGAACTTGGGTGGCATCTATCTCTTCTGTCACTCCTTATGTTGGTCTGGTTGGATTGTGATGCAAGCATTTGTTCTGAAAATATACTCAGCCCCGCTCACAGTTTCTGCATTTACGTGCTTCTTTGGTGTTGTGCAGTTTTTGACAATTGCAGCTTTTTTTGAGAAGGATTCCAAAGCCTGGCAGTTCAATTCTAGTGGAGAGATCTACAGTGTTTTGTTCTCGGGAGTGGTGACTTCAGGGCTGGCATCAGCAATACAGATATGGACTATTGGCAAAGGAGGGCCAGTTCTTGCTTCAATTTATCTACCTTTACAAACATTACTAGTAGCTGTGATGGCATCTATTATTTTCGGTGAAGAATTCTTCTTGGGAGGGATTATTGGAGCACTCTTAATCATATTCGGTTTGTATCTTGTTGTATGGGGAAGAAGTCAAGAAACCAAGACTCTCAGAGAGGTCATAGTCCCCCTTGATTCCAATAATCACTGGGAAGAAAGAAGTGACGCTTTTTCTCTTAACCAACCGTTGATTACTGCACAAAGCTCTTAG 1089 0.4215 MLPERANLHIALTFLQFCYAGNHIFLRIALDTGVSKLIFPVFRNITALVLLGPLAYFSEKKDRPSITTYCVVHFFLLGLVGITMKEGFYLLGLEKTSPTFAAAMQNSVPALTFLMAALLRYESVHFNRIDGVAKVLGVLASVGGATIITLYKGPVIYSPRLGFNQEQYLTMMGDTPGKDWNLGGIYLFCHSLCWSGWIVMQAFVLKIYSAPLTVSAFTCFFGVVQFLTIAAFFEKDSKAWQFNSSGEIYSVLFSGVVTSGLASAIQIWTIGKGGPVLASIYLPLQTLLVAVMASIIFGEEFFLGGIIGALLIIFGLYLVVWGRSQETKTLREVIVPLDSNNHWEERSDAFSLNQPLITAQSS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3550g00003 362 PANTHER WAT1-RELATED PROTEIN 10 327 IPR030184 GO:0016020|GO:0022857
Vium3550g00003 362 Pfam EamA-like transporter family 16 145 IPR000620 GO:0016020
Vium3550g00003 362 Pfam EamA-like transporter family 183 320 IPR000620 GO:0016020
Vium3550g00003 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 227 324 - -
Vium3550g00003 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3550g00003 Vium-Chr3550 59452 62095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3550g00003 2 328 Nodulin-like Gene Family AT1G75500 57.958 8.57e-139 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3550g00003 - - gmx:100790386 625.55