Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3550g00001 ATGGCGGGTTTATTCTCACTAGGAGGTAGAGGGAACAACAACAACAACGAAGAGGAAATTCCTCCCCCTCCTGATACCCTATACTGGTATAACAACAAGAATGATGATGTTTCTTCTTATCACCGAGGAGGTGGCTTTGAGCTATGGAACCAACAGCAGTTACAACAGCAACAACAACACTTTATGGGTCAGGGTCCTCCACAACCACGGCCTCTCTTTCACCAAGATCTATACTCCGCCTTGGGTGTTGGACCCAGCAGACCCATATCCGACGATCAGTCATCGTCAAGATCCAGCTTCATGGTGGGAGGAAGCGGAAGTGGAAGCGGTGGAATTAGCTGTCAGGACTGTGGGAACCAAGCTAAAAAGGATTGCCCTCACATGCGGTGCAGAACATGCTGCAAGAGCCGGGGCTTCGATTGCCAGACCCATGTCAAGAGCACATGGGTCCCCGCTTCACGCCGCCGCGAGAGACAGCAGCAACTCTCTGCGTTGCAACAAAACATGGAAACTTCTGGAGACCTTCCCAGAAGGCAGAGAGAAAGAGATCATAATAACCCCACTTCCTCTTCTCCTCTTGCTTGCACTCGCTTGCCTTCCAATCCCTCCTCTTCAGGGTTAGAGGAGGTGAATTTCCCGGCGGTGGTGAGATCTTCTGCGGAGTTCAGGTGCGTACGTGTGAGCTCGATAGATGAGGCGGAAGAGGAGTATGCGTACTCAACTGCTGTCAACATAGGAGGGCATGTGTTCAAAGGGATTTTATATGACTATGGTCCGGAAGGTAACAGTAACTTCTTGGGTGGTGCTGGGGAAAGCTCGTCCACTGGTGTTGGAGGTTTGAACCTCACTACTGGTGCCGTTGTCTCAGAGCCACTCCTTGATCCTTCTTCTTCCTTGTATCCAGCTCCTCTTAACACCTTCATGCCTGGTAGTGGTACGCAATTCTTCCCTCACCCACGATCTTGA 966 0.5104 MAGLFSLGGRGNNNNNEEEIPPPPDTLYWYNNKNDDVSSYHRGGGFELWNQQQLQQQQQHFMGQGPPQPRPLFHQDLYSALGVGPSRPISDDQSSSRSSFMVGGSGSGSGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERQQQLSALQQNMETSGDLPRRQRERDHNNPTSSSPLACTRLPSNPSSSGLEEVNFPAVVRSSAEFRCVRVSSIDEAEEEYAYSTAVNIGGHVFKGILYDYGPEGNSNFLGGAGESSSTGVGGLNLTTGAVVSEPLLDPSSSLYPAPLNTFMPGSGTQFFPHPRS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3550g00001 321 MobiDBLite consensus disorder prediction 151 173 - -
Vium3550g00001 321 NCBIfam putative zinc finger domain, LRP1 type 113 155 IPR006510 -
Vium3550g00001 321 MobiDBLite consensus disorder prediction 88 105 - -
Vium3550g00001 321 Pfam Domain of unknown function (DUF702) 111 260 - -
Vium3550g00001 321 MobiDBLite consensus disorder prediction 1 32 - -
Vium3550g00001 321 MobiDBLite consensus disorder prediction 186 208 - -
Vium3550g00001 321 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 305 IPR007818 GO:0003700|GO:0006355
Vium3550g00001 321 MobiDBLite consensus disorder prediction 151 208 - -
Vium3550g00001 321 MobiDBLite consensus disorder prediction 52 71 - -
Vium3550g00001 321 NCBIfam LRP1 C-terminal domain 212 259 IPR006511 -
Vium3550g00001 321 MobiDBLite consensus disorder prediction 83 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3550g00001 Vium-Chr3550 32980 35801 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3550g00001 1 310 C2H2 Transcription Factor Family AT5G66350 50.746 2.15e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vium3550g00001 DUF702 1.7e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3550g00001 - - gmx:100814589 479.944