Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3544g00001 ATGGCGCTGCTCTCAATTATCGTTTTCCTCCTCCAACTCAGTTATCATGTCAGAGTCAACTCGGAGCCGACTCAGGACAAGCAAGCCCTCCTTGCTTTCCTCTCCCAAACCCCACACTCCAACCGCCTCCAATGGAACGCTTCCGCTTCGGCATGCGACTGGGTGGGTGTCAAATGCGACGACTCCCGCTCCTTCGTCTACTCGCTCCGTTTGCCCGCCGTCGACCTCGTGGGTCCGGTTCCGTCCGCCACAATCGGTCGCCTCTCCCAGCTTCGGATCCTCAGTCTCCGCTCCAACGGTCTCACCGGCGAGATCCCTGCCGATTTCTCAAACCTCACCTTCCTCCGCAACCTCTACCTCCAGAAAAACCAGTTCTCCGGAGAGTTCCCTCCGAGTCTCACTCGCCTCACTCGTCTCACTCGCTTGGATCTCTCCTCCAACAACTTCACCGGTCAAATCCCTTTTTCCGTCAACAACTTAACCCACCTCACCGGCCTCTTCTTGGAGCACAACGGCTTCTCTGGGAAAATCCCCAGCATCACTGCCAAGCTCGTTCGCTTCAACGTTTCCTTCAACCGCCTCAACGGTTCCATTCCGGAGACGCTCTCCTCTTTCCCCGACTCCTCATTTGCAGGAAACGTAGATCTCTGTGGCCCGCCGTTGAAGGCCTGCAACCCCTTCTTCCCGGCTCCGGCGCCGTCTCCCTCCTCCAATTCGACCCCGACCAAGACGCGTAAGAAGTCCAAGAAGCTCTCCACGGGCGCCATTGTCGCAATCGTTGTCGGGTCCGTTCTCGTCGCGGCGTTGCTGCTGCTGCTGTTGCTGCTGTGCCTCCGGCGCCGGAGACGGCAGCCAGCGAAACCGCCGAAGCCTGTTGCTGCGGCACGTGCCGTGCCGGTGGAGGCGGGGACGTCGTCGTCGAAGGAGGATATCACCGGGGGTTCTGCGGAGGCGGAGAGGAACAAACTGGTGTTCTTTGAAGGGGGGATATACAGTTTCGATTTGGAGGATTTGTTGAGGGCTTCGGCGGAGGTGTTGGGAAAGGGCAGCGTGGGGACTTCGTACAAGGCGGTGCTTGAGGAAGGAACGACGGTGGTGGTGAAGAGGCTGAAGGATGTTGTGGTGTCAAAGAAAGAATTCGAGATGCAAATGGAAGTTCTGGGGAAGATAAAGCACGATAATGTGGTGCCTCTCAGAGCCTTTTACTTCTCCAAGGACGAGAAATTGCTCGTTTACGATTACATGTCTGCCGGCAGCTTGTCTGCTCTCCTTCACGGGAGCAGAGGGTCTGGGAGAACACCGCTGGACTGGGACAGCAGAATGAAAATAGCAGTAGGAGCGGCACGGGGGTTGGCATGCCTCCACGTGGCAGGCAAGGTGGTCCACGGCAACATAAAATCTTCCAACATCCTCCTCCGAGGGCCGGACCACGATGCCGGCGTTTCGGACTTTGGTCTAAACCCCTTGTTCGGGAACGGAACCCCGTCGACCCGAGTGGCGGGTTACCGGGCACCCGAGGTGGTCGAAACTCGAAAGGTGAGCTTCAAGTCTGACGTGTACAGCTTTGGCGTCTTGCTGTTGGAGCTGCTGACGGGGAAAGCTCCGAACCAAGCGTCGCTTGGGGAAGAGGGCATCGACCTACCGAGGTGGGTCCAGTCGGTGGTGCGCGAAGAGTGGACCGCGGAGGTGTTCGACGCGGAGCTCATGAGGTATCACAACATCGAGGAAGAGATGGTACAGCTCTTGCAAATAGCCATGGCGTGTGTTGCGGTGGTGCCTGACCAGAGGCCCAGCATGCAGGAGGTGGTGCGCATGATCGAGGACATCAACCGGGGCGAGACCGACGACGGCTTGCGTCAGTCCTCCGATGACCCTTCTAAAGGATCCGAGGGTCACACTCCTCCCCCGGAGTCAAGGACGCCGAGGTCACTCACACCTTAA 1941 0.5837 MALLSIIVFLLQLSYHVRVNSEPTQDKQALLAFLSQTPHSNRLQWNASASACDWVGVKCDDSRSFVYSLRLPAVDLVGPVPSATIGRLSQLRILSLRSNGLTGEIPADFSNLTFLRNLYLQKNQFSGEFPPSLTRLTRLTRLDLSSNNFTGQIPFSVNNLTHLTGLFLEHNGFSGKIPSITAKLVRFNVSFNRLNGSIPETLSSFPDSSFAGNVDLCGPPLKACNPFFPAPAPSPSSNSTPTKTRKKSKKLSTGAIVAIVVGSVLVAALLLLLLLLCLRRRRRQPAKPPKPVAAARAVPVEAGTSSSKEDITGGSAEAERNKLVFFEGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVSKKEFEMQMEVLGKIKHDNVVPLRAFYFSKDEKLLVYDYMSAGSLSALLHGSRGSGRTPLDWDSRMKIAVGAARGLACLHVAGKVVHGNIKSSNILLRGPDHDAGVSDFGLNPLFGNGTPSTRVAGYRAPEVVETRKVSFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRYHNIEEEMVQLLQIAMACVAVVPDQRPSMQEVVRMIEDINRGETDDGLRQSSDDPSKGSEGHTPPPESRTPRSLTP 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3544g00001 646 ProSiteProfiles Protein kinase domain profile. 340 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3544g00001 646 SUPERFAMILY L domain-like 25 205 - -
Vium3544g00001 646 FunFam pollen receptor-like kinase 1 309 414 - -
Vium3544g00001 646 Gene3D Phosphorylase Kinase; domain 1 307 414 - -
Vium3544g00001 646 MobiDBLite consensus disorder prediction 287 313 - -
Vium3544g00001 646 Pfam Leucine Rich Repeat 90 112 IPR001611 GO:0005515
Vium3544g00001 646 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Vium3544g00001 646 Gene3D Ribonuclease Inhibitor 23 182 IPR032675 -
Vium3544g00001 646 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 415 620 - -
Vium3544g00001 646 Gene3D Ribonuclease Inhibitor 184 224 IPR032675 -
Vium3544g00001 646 SUPERFAMILY Protein kinase-like (PK-like) 344 609 IPR011009 -
Vium3544g00001 646 PANTHER OS05G0588300 PROTEIN 6 622 - -
Vium3544g00001 646 Pfam Protein kinase domain 343 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3544g00001 646 MobiDBLite consensus disorder prediction 228 247 - -
Vium3544g00001 646 FunFam Probable inactive receptor kinase RLK902 23 181 - -
Vium3544g00001 646 CDD STKc_IRAK 346 609 - -
Vium3544g00001 646 Gene3D Transferase(Phosphotransferase) domain 1 415 627 - -
Vium3544g00001 646 MobiDBLite consensus disorder prediction 608 626 - -
Vium3544g00001 646 MobiDBLite consensus disorder prediction 608 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3544g00001 Vium-Chr3544 5214 8762 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3544g00001 26 627 Receptor kinase-like Gene Family AT5G58300 54.010 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium3544g00001 Pkinase 4.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3544g00001 - - gmx:100806857 1028.47