Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3540g00003 ATGAACTGTTTGTTCTTCAAAAAGAAATCAAAATCCCACCAGAACTCCCAAAGGGACGGAAGAAAAAGCCAGGTTGTGAATGGAGCACCGAAGTCCCCAAGCTCGGTACCATCGCCGAGGAGCATAAAAGAATTGTACAGAGAGAAGGAACAGAGTTACAGAATTTTCAGTTTAAAAGAGCTTATAGATGCAACAAATGGTTTCAATAGCATGCTGAAGATTGGAGAAGGTGGTTTTGGAAAAGTATATAGAGGAACCATCAGTCCTAAAGATGGACCTTCTCCAATTGTAGTCGCAATAAAAAAACTTAACGCGCATGGCTTACAGGGACACAAAGAATGGCTTGCAGAAGTTCAATTTCTGAGCGTTGCTAACCACCCTAATTTGGTTAAGCTTCTGGGATACTGCTCAATAGACAGTAAAAGAGGAATCCAACGGTTGTTGGTATATGAGTTCATGTCTAACAGGAGTCTGGAAGATCATCTTTTCAGTGTTTCTTTACCTCCTTTGCCTTGGCCAACAAGATTGCAGATCATGCTCGGTGCTGCTCAAGGATTGTATTATCTCCACAACGGATTGGAGATTCAGGTGATCTACCGCGATTTCAAATCTTCAAACGTGTTGCTGGACAAGCAATTTCATCCCAAACTTTCAGATTTTGGTCTTGCAAGAGAGGGTCCAACAGGTGACAAGACTCATGTATCTACTGCGGTAGTGGGGACACAGGGATATGCTGCCCCAGAGTACGTTCAGACGGGTCATCTGAAAGTTCAGAGTGATATTTGGAGTTTTGGTGTGGTGCTTTATGAGATCCTCACAGGGAGACGTGCATTGAATAGAAACCGTCCAATAGGAGAACAAAAGCTTGTAGAATGGGTTAAACATTACCCTGCCAACAGTAGCAGGTTCAGCACCATCATCGACCGACGTCTCAATAACCAATACTCTCTTGCTGCTGCTCAAGTAGCCAACTTGGCAGATTGCTGCTTGAAGAAGAATCCTGAAGACAGACCCTCCATGAGTCAGATAGTGGAAACCTTGAACCAAGCATTGCAGGATTCACAAACCCAAAACACTTCACCTAATAACACTCCTATATCCACACCATCCAGATTGGTCTCAACTGCTAAATAA 1134 0.4339 MNCLFFKKKSKSHXQNSQRDGRKSQVVNGAPKSPSSVPSPRSIKELYREKEQSYRIFSLKELIDATNGFNSMLKIGEGGFGKVYRGTISPKDGPSPIVVAIKKLNAHGLQGHKEWLAEVQFLSVANHPNLVKLLGYCSIDSKRGIQRLLVYEFMSNRSLEDHLFSVSLPPLPWPTRLQIMLGAAQGLYYLHNGLEIQVIYRDFKSSNVLLDKQFHPKLSDFGLAREGPTGDKTHVSTAVVGTQGYAAPEYVQTGHLKVQSDIWSFGVVLYEILTGRRALNRNRPIGEQKLVEWVKHYPANSSRFSTIIDRRLNNQYSLAAARXVANLADCCLKKNPEDRPSMSQIVETLNQALQDSQTQNTSPNNTPISTPSRLVSTAK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3540g00003 379 Pfam Protein tyrosine and serine/threonine kinase 74 349 IPR001245 GO:0004672|GO:0006468
Vium3540g00003 379 MobiDBLite consensus disorder prediction 348 379 - -
Vium3540g00003 379 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 154 363 - -
Vium3540g00003 379 ProSiteProfiles Protein kinase domain profile. 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3540g00003 379 SUPERFAMILY Protein kinase-like (PK-like) 51 349 IPR011009 -
Vium3540g00003 379 Gene3D Phosphorylase Kinase; domain 1 49 153 - -
Vium3540g00003 379 MobiDBLite consensus disorder prediction 8 40 - -
Vium3540g00003 379 CDD STKc_IRAK 75 351 - -
Vium3540g00003 379 MobiDBLite consensus disorder prediction 19 40 - -
Vium3540g00003 379 Gene3D Transferase(Phosphotransferase) domain 1 154 371 - -
Vium3540g00003 379 ProSitePatterns Protein kinases ATP-binding region signature. 75 103 IPR017441 GO:0005524
Vium3540g00003 379 PANTHER OS01G0588500 PROTEIN-RELATED 24 353 - -
Vium3540g00003 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3540g00003 Vium-Chr3540 11214 13638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3540g00003 1 349 Glycoside Hydrolase AT3G07070 43.213 7.89e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium3540g00003 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3540g00003 - - gmx:100782248 588.571