Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3535g00001 ATGGCAGCTTGCACTGTGTACTCAACACAATCTCTCAGCACAAATTGCTCCATCTCAACCCCATCAAAAACACAACTGAGTTTTCACCAAAAGCAGGTAGTATTCTACACCACAAGCAGGAGGAACAGCAAGAGGGGCATCAACAGTGGCAGAAGCTATGTGATAACATGTGCAGCAAGTGACCAACAGACAGTGGTGATTGGTCTGGCTGCTGACTCAGGTTGTGGAAAAAGTACCTTCATGAGGAGGCTTACCAGTGTGTTTGGAGGAGCAACAGAACCACCAAAGGGTGGCAACCCTGATTCCAACACTCTCATCAGTGACACCACCACAGTCATATGCTTGGATGATTACCACTCATTGGATAGAACTGGCAGAAAGGAGAAGGGAGTCACTGCCCTTGACCCCAGAGCCAACGATTTTGATCTCATGTATGAACAAGTTAAAGCAATCAAAGATGGAATTGCTGTTCAAAAACCAATCTACAACCATGTCACTGGTCTCTTGGACCCCCCAGAGCTCATCAAACCTCCCAAAATCTTAGTCATTGAAGGTTTGCACCCAATGTTTGATTCCCGTGTCAGAGACCTCTTGGACTTTAGCATCTACCTAGACATTAGCAATGAGGTGAAATTCGCTTGGAAAATTCAGAGAGAAATGGCAGAGCGTGGACATAGTCTTGAAAGCATCAAGGCTAGCATTGAAGCAAGAAAGCCTGATTTTGAAGCATACATTGATCCACAAAAGCAATATGCAGATGCTGTGATAGAAGTGTTGCCAACTCAACTGATTCCAGATGACAATGAGGGTAAGATTTTAAGAGTGAGGTTGATACAGAAAGAAGGAGTTAATTTCTTCAGTCCAGTTTACTTGTTCGATGAGGGCTCTACCATTTCATGGATACCATGTGGAAGGAAGCTTACATGCTCCTACCCTGGCATCAAATTCTCCTATGGACCAGACACTTACTACGGAAATGAGGTGTCAATTGTAGAAATGGATGGACAGTTTGACAGATTAGATGAACTAATATACGTTGAGAGTCACCTAAGCAACCTTTCTACCAAGTTCTATGGAGAAGTTACTCAACAGATGTTGAAGCATGCTGATTTCCCCGGCAGCAACAATGGCACAGGTCTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATCTATATGAACAGATAGTAGCCACCAGGGCTGAGACTCCAGTAGCTGCAAAAGCTTAG 1230 0.4398 MAACTVYSTQSLSTNCSISTPSKTQLSFHQKQVVFYTTSRRNSKRGINSGRSYVITCAASDQQTVVIGLAADSGCGKSTFMRRLTSVFGGATEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKDGIAVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDSRVRDLLDFSIYLDISNEVKFAWKIQREMAERGHSLESIKASIEARKPDFEAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVNFFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFSYGPDTYYGNEVSIVEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIVATRAETPVAAKA 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3535g00001 409 CDD PRK 66 355 - -
Vium3535g00001 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 334 IPR027417 -
Vium3535g00001 409 PANTHER URIDINE KINASE 58 311 - -
Vium3535g00001 409 FunFam Phosphoribulokinase 61 291 - -
Vium3535g00001 409 Pfam Phosphoribulokinase / Uridine kinase family 66 264 IPR006083 GO:0005524|GO:0016301
Vium3535g00001 409 PRINTS Phosphoribulokinase family signature 180 198 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vium3535g00001 409 PRINTS Phosphoribulokinase family signature 71 88 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vium3535g00001 409 PRINTS Phosphoribulokinase family signature 215 232 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vium3535g00001 409 PRINTS Phosphoribulokinase family signature 233 256 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vium3535g00001 409 Gene3D - 61 301 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3535g00001 46 256 PRT Gene Family AT1G55810 25.346 4.06e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3535g00001 K00855 - gmx:100807126 768.459