Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3532g00002 ATGGAAGGCTCTGAATCCGATTCTGCGCCACTTTCCATTTCCAATGGCGAAGATCCCCAATTGGGGGCTTCTTCTCCCCCTCCTTCTCCTCCTCCTCAATCTTCAGATCTCAATCACGCCGCCGAGCATGAGATACTCTCTGGGGAGCTTCAGAGCAAGTTGGATTTGAAGGCTGAGGATGAAAGTGAGGGCAAAGTTTCCGACTTGAACGACGGTGGAGGAGTTTGCGACGAAGAAACTGCTAAGGGTGATGGAGATAGTAGGGGTTCGGACTCAAATAGTTGGAATGAGGAAGTGGGTGTTGGTGCTGATGAAGATGGTGTTGGTATTGGTGATGTTCATGGTGATGATGGAGAGGAGATGAAGGAAGAGAGAAACAGTGATGTTACTCACCACTACCCTTTGAGGCCTGAAGCTGAGGATTGTGCATTTTATATGAAAACTGGGAATTGCAAGTTTGGGTTTAACTGCAAGTTTAATCACCCTATTAGAAGGAAAACCCAGGCTGTTAGAGAGAAGGCGGGAGAAAGAGAAGAACCCACAGACAGATCAAGCTCAACAGAATGCAAGTATTATCAAAGATCTGGGGGTTGTAAGTTTGGAAAATCTTGTAAATATAACCACACAAGAGGAAAAATTTCAACAACACCAGCACTGGTACCAGTTTTTGAACTTAACTTTCTTGGCCTGCCTATTCGTCAGGGGGAGAGGGAGTGCCCCTACTACATGCGCACTGGCTCTTGTAAATTTGGAGCAAACTGCAAGTTCAACCATCCTGACCCTACAGTTGGAGGATGTGATCCTCCTTCAGGGTTTGGTAATGGAGGACCTATTTCATTACAAGGTGTATCACGACCATCTGTACCCTCCTGGTCTTCTCCAAGATCATTAAACGAAGCATCTCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGAGTTTCTACCCAAAGTTCTGACTGGAATGGATACCAGGCATCTGTCTACCTACCTGAGAGGAACATGCATCCACCTTCTACATTTGTCTTGAACAACCCAGCAGTCGATACAAATGTTTACTTGCACCATCAGAAGCAGATGTCCGTGGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTACTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTTCCTTTGAGACCTGACCAAAGTGTCTGCTCCCATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCTATAAACTTGCAGCCCTTGATGATGTCTGGACTTGGGGACCAGTCATACTCAAATTCAGCTAGTGTGGAGGTGGCTGGGATAGGTGAAAGTACAGCTGAAACTGATGTAACAATTCAGCAATCTGTGTAA 1449 0.4541 MEGSESDSAPLSISNGEDPQLGASSPPPSPPPQSSDLNHAAEHEILSGELQSKLDLKAEDESEGKVSDLNDGGGVCDEETAKGDGDSRGSDSNSWNEEVGVGADEDGVGIGDVHGDDGEEMKEERNSDVTHHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIRRKTQAVREKAGEREEPTDRSSSTECKYYQRSGGCKFGKSCKYNHTRGKISTTPALVPVFELNFLGLPIRQGERECPYYMRTGSCKFGANCKFNHPDPTVGGCDPPSGFGNGGPISLQGVSRPSVPSWSSPRSLNEASPFVPMMLSPTQGVSTQSSDWNGYQASVYLPERNMHPPSTFVLNNPAVDTNVYLHHQKQMSVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINLQPLMMSGLGDQSYSNSASVEVAGIGESTAETDVTIQQSV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3532g00002 482 MobiDBLite consensus disorder prediction 166 185 - -
Vium3532g00002 482 SUPERFAMILY CCCH zinc finger 412 440 IPR036855 GO:0046872
Vium3532g00002 482 ProSiteProfiles Zinc finger C3H1-type profile. 183 211 IPR000571 GO:0046872
Vium3532g00002 482 Gene3D - 109 174 - -
Vium3532g00002 482 MobiDBLite consensus disorder prediction 1 22 - -
Vium3532g00002 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 370 395 IPR000571 GO:0046872
Vium3532g00002 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 416 440 IPR000571 GO:0046872
Vium3532g00002 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 208 IPR000571 GO:0046872
Vium3532g00002 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 162 IPR000571 GO:0046872
Vium3532g00002 482 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 259 IPR000571 GO:0046872
Vium3532g00002 482 SMART c3hfinal6 183 210 IPR000571 GO:0046872
Vium3532g00002 482 SMART c3hfinal6 136 163 IPR000571 GO:0046872
Vium3532g00002 482 SMART c3hfinal6 233 260 IPR000571 GO:0046872
Vium3532g00002 482 SMART c3hfinal6 414 441 IPR000571 GO:0046872
Vium3532g00002 482 SMART c3hfinal6 368 395 IPR000571 GO:0046872
Vium3532g00002 482 Gene3D - 413 460 - -
Vium3532g00002 482 Gene3D - 349 409 - -
Vium3532g00002 482 Gene3D - 178 265 - -
Vium3532g00002 482 PANTHER PROTEIN PHOSPHATASE RELATED 32 459 - -
Vium3532g00002 482 ProSiteProfiles Zinc finger C3H1-type profile. 233 261 IPR000571 GO:0046872
Vium3532g00002 482 MobiDBLite consensus disorder prediction 1 120 - -
Vium3532g00002 482 SUPERFAMILY CCCH zinc finger 236 261 IPR036855 GO:0046872
Vium3532g00002 482 SUPERFAMILY CCCH zinc finger 186 213 IPR036855 GO:0046872
Vium3532g00002 482 MobiDBLite consensus disorder prediction 166 186 - -
Vium3532g00002 482 ProSiteProfiles Zinc finger C3H1-type profile. 414 442 IPR000571 GO:0046872
Vium3532g00002 482 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Vium3532g00002 482 SUPERFAMILY CCCH zinc finger 135 164 IPR036855 GO:0046872
Vium3532g00002 482 MobiDBLite consensus disorder prediction 42 67 - -
Vium3532g00002 482 SUPERFAMILY CCCH zinc finger 373 397 IPR036855 GO:0046872
Vium3532g00002 482 ProSiteProfiles Zinc finger C3H1-type profile. 368 396 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3532g00002 Vium-Chr3532 18740 22989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3532g00002 364 465 C2H2 Transcription Factor Family AT3G02830 47.115 1.91e-22 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium3532g00002 zf-CCCH 7.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3532g00002 - - vun:114178095 924.85