Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3532g00001 ATGGCAGCTTCGGAGGAAGTACTGCCGTGGCTGAAGTCGCTGCCGGTGGCGCCGGAGTACCGCCCAACCGAGGCGGAGTTTCAAAACCCGATCGCCTATATCTTTAAAATTGAGAAAGAAGCCTCTCAGTACGGAATCTGCAAGATCATTCCCCCGCTTCCCCCTTCTCCTAAGAAAACAGCAACTGCCAACCTCACGCGCTCCCAGCCCACCTTTACCACGCGCCAACAGCAGATCGGCTTCTGCCCCCGACGTGTTCAGCCAGTGCGCCGCCGCGTATGGTACAGCGGTCATCACTACTCTCTTCGGGAATTCGAAGCCAAGGCTAAGGCCTTCCACAAAACCTACCTCAAGAAAAGCAAACCCAAACCCTCCCCTCTCGAACTCGAAACGCTCTACTGGAAAGCCACTTTAGACAAACCCTTCTCTGTCGAATACGCTAACGACATCCCTGGCTCCGCGTTTAGTCCCCTCCGTGCTTTGCGCGATGCCGATTACGTTGGTGACACCCCATGGAATATGAGGGCGATTTCGCGGGGGAGCGACTCGCTTCTTAGGTTCATGAAAGAGGAAATTCCCGGCGTGACGTCACCCATGGTCTACGTGGCCATGTTGTTCAGCTGGTTCGCGTGGCATGTGGAGGATCACGACTTGCATAGCTTGAATTACCTCCATTTCGGCGCTCCCAAGACTTGGTATGGCGTGCCTAAGGATGCTGCCGTCGCATTCGAGGAGGTTGTCAGAGTTCATGGCTACGGTGGCGAGATCAATCCTCTTGTTACTTTTGCTATTCTTGGCGAGAAAACCACGGTGATGTCACCGGAGGTTTTTGTTGGTGCCGGTGTTCCCTGCTGCAGGCTGGTTCAAAATGCTGGGGAATTTATAGTGACGTTTCCAAGAGCTTATCACACAGGATTTAGTCATGGGTTTAACTGTGGAGAAGCGGCTAACATTGCGACGCCTGAATGGTTAAGGTTTGCTAAGGATGCTGCTATTCGAAGGGCTTCCATTAACTATCCTCCCATGGTGTCACATTTCCAGTTGCTTTATGACCTTGGCCTTGCCTTGTGTTCTAGAATCCCTGGAGGCATTAGAGCTGAACCACGGAGTTCTCGGCTTAAATATAAGAGAAATGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGACGTGGTAGAGAACAATGATCTGCTTCACACACTCAGCAAAGGATCTGATATAGTACTTCTCCCTCGTAGCTCTTCTGATTTTTCTGTTTGCTCAAAATTACGCGTTGGGTCACGACAACTAAAAGTGAACCCTGACTTTTCTCTCAATGTATACAATTACGAGGGAATGGATTCCTCAGATTTTATTTCTAATGACCTTATGTTCAACAGGAATCATGGAATCAAACAAGTAAAAAGTTTTTATTCTGTAAAAGAGAAGTTTGTTACGTTGTGTGAAAGGAACAGGGTTCTGCCATTAAGTTCAAATGGGAACATATACACTTCAAGTTCAAAAACACTGCAACGAGACAGTAAAAAGGAAACAGATCAAGGAGATGGATTGTCAGATCATAGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCCATTGTGCAGCCCAGAGAACCAGCAGCTACGTACCTTATGTCGGCTGATTGTAGTTTCTTTAATGATTGGATTGTTGGTTCTGGAGTAACTAGCAATAAATTTTCAATTGCCCATGAAGATGCAAGTATTCCCAAGCCAAGAACATATACAGGATGGACTAAACAAAATGCCCAACATGATTCAAATGGTGTTCCCATTCAATCTGTTAAGCACCATGCACAGATTGCTGATCAAAATTATGAGGAGGCTTTAAATTCTGGAAGAGAAAAAGGCAATACAGCTCTTGCATTATTGGCATCAGCGTATGGAAATTCTTCTGACTCTGAGGAAGATCGGGGGGGATTAGATATTGCACTTGATGATGATGAATTGAATGCAGTAAACCATTCAACCTCTAATGAATCTCAGGAGATGTCTAGTATGCCTTCTCATTTTCAAGATCCCCATACTAGTCCCATGGTTAGAGTCATTAGACTTAATAAAGGAGATGATATTAATTCAAGAAGAAAAGACAATTATGAGTATTATATGCATAAGAGACTTGAGCAAATTATGACTCCTTTTGACTACTCTGTTAAGTCAGAAGATCATGACAACACTTCAGGGGTGGCATTTAGAAATACTAGGGCTGTGCCCCATCCCACCTTGAATTGTTCCCAAGATACTCACACTGATGAAGACTCGTCTAGAATGCATATCTTTTGTTTAGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGTCCAATCGGAGGAGCACACATATTGCTCCTATGTCATCCAGATTATCCAAAGATAGAGGCTGAAGCAAAGTTTGTGGCAGAAGAACTGGGGATTGGTTATACGTGGAAGAATACTGTATACAGGCAGGCCAACAGGGAAGATGAGGAGAGGATCCAATCAGCTCTGGATAGTGAGGAAGCTATTCCTGAAAATGGGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGTTCAGCACTTTACAGTAAGCAGATTCCTTACAATTCTGTTATATATAAAGCATTTGGTCAAAGCTCTCCAGGAAGCTCGCCTACAGAGCCCAAGGTCTATCAGAGAAGGACCAACAAGCAGAAAAAGCTAGTTGCTGGGAAATGGTGTGGCAAAGTTTGGATGTCCAATCAAGTCCATCCTCTTTTAGCCAAAAGAGATTCTGAAGATGTTGAGGATGAAACAAGCTTACATGGGTGGCCATTGCCTGATGAGAAAATTGAGAGATCAGAAAGCAACCACAAAAGCAATACCTCAACTCGAAAATCTGGTAAGAAATGGAAAAAATCTGTTGAGAAAGGAGGAATCTGGGAAGAAAGCTTTGTTGAGAGAGATTGGCTTTCAGATAACTCCATTGAAGATAAATCCAATAAATATCAAAGGAGGATTATTGGGGGTAAGCGCTCCAGGCATATTGAGAGATATGATACTGCTTCGGAAGGGGATTATTCTCCTCTGCCACTTCATAGAAAGCCTATAACCAAGCATTCAGAATCTAGTGAAGATGATGCAATGTCTGATGATTTGCTGGATGATGATTCTTGTATACAGCATCGGGGGAGGGCTAACACCAACGAAGCTAAATTAATTGACAGTGATGTGTTTTCAGATGATACAATGGACTATGGTTCTGATTGGTTGCGGAGGGGGGAGCTTAGCAATGAGCAAGATGCTATTTCAGACGATTCATTGAGTGCTGGTTCTCTTCAGCTGCACGGAAAGACTCCCAAAGGCAAGTATGATAAATACATTACTGAAGAAGACGTGATTTCTGATGACCAAAGGGAGGTTTGTTTATGGAAGCAGAGAGGGAAGATATCTAAAGGCAGACAAAGATCACTTTCTGCTAAAAATGAAGATGGTCTGAAGCACCATAGGCAGAAGCAGCAACAAAGGAATCTGAGAAGCAGGCAAGACAAGCACTTTGCAGTAGAGAATATTACATCTGATGACCAAATGGAGGGTCGGTTTTTCAAGTGTCAAAGAAGGATTCCTAATATTAGAAAGTGGGTTTTAATCGATGTGGGACTTCCAACACCTAAAAACAAGCAAGTGAAGTTAATCGAGGAGGAAGATGTAATGTCTGATGACCAGTTGAAGGATGACTTTCAGAAGCCCCAAAGAAGTACTCGAAGGAGCAGGCAAAATAAATACAATGATAAAGATGTTATGGATGACTTGGCAGAAAATAATTTTCATATACTGTATAGAACTCGTAAAAGGAAGCAAGTTAAAGGTATGGACGAGGACAATATAGATTCAGATGATCAAATGGATGATATTTTGCATCAGCAGCACAAAAGAACTCTTCAAAGTAAGCAGTCTAAAGCACAGATTCTTCAACAAACGAAACAAACTAATCCACGCCATGCAAGAAACAAGACATCCCATCCTGCCAAACAGAAACAAGGTGCTCATACGCAAATGAAATCAAAGGCTGCTCGGCAGACAAAGAATCAATCTGGTAACTCCAAAGACTTAACATTACATGTGGAAGAGGAGGACGATGGTGGACCTCGCACGCGACTTAGGAAGAGAGTCCTAGAAAAAGAGTCAGAAGGAAAATTGAAAGAAAAGAGAACCAAAAGGGAAAAGGAGAAGAATACAACTGCTGCAAAGGTTTTAGTTGGCCATGCCAAAACAAAGGATGAGGAATCAGAATATCAATGTGACATCGAGGGATGTACCATGAGTTTTGGGTCTAAACAGGAGCTGTTGCAACACAAGAGAAATATTTGTCCTGTGAAAGGATGCGGAAAGAAGTTTTTCTCACACAAATATCTAGTGCAGCATCGTCGAGTTCATGAGGATGACCGCCCATTGAAGTGCCCTTGGAAAGGGTGCAAGATGAGTTTCAAGTGGGCATGGGCACGCACTGAGCACATTCGAGTCCACACTGGTGCTCGTCCTTATGTGTGCGCTGAGCCAGGGTGTGGGCAAACATTTAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATGCAACCAAAAAGAATTGTTGA 4656 0.436 MAASEEVLPWLKSLPVAPEYRPTEAEFQNPIAYIFKIEKEASQYGICKIIPPLPPSPKKTATANLTRSQPTFTTRQQQIGFCPRRVQPVRRRVWYSGHHYSLREFEAKAKAFHKTYLKKSKPKPSPLELETLYWKATLDKPFSVEYANDIPGSAFSPLRALRDADYVGDTPWNMRAISRGSDSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHFGAPKTWYGVPKDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFVGAGVPCCRLVQNAGEFIVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRIPGGIRAEPRSSRLKYKRNGEGETVIKELFVQDVVENNDLLHTLSKGSDIVLLPRSSSDFSVCSKLRVGSRQLKVNPDFSLNVYNYEGMDSSDFISNDLMFNRNHGIKQVKSFYSVKEKFVTLCERNRVLPLSSNGNIYTSSSKTLQRDSKKETDQGDGLSDHRLFSCVTCGILSFSCVAIVQPREPAATYLMSADCSFFNDWIVGSGVTSNKFSIAHEDASIPKPRTYTGWTKQNAQHDSNGVPIQSVKHHAQIADQNYEEALNSGREKGNTALALLASAYGNSSDSEEDRGGLDIALDDDELNAVNHSTSNESQEMSSMPSHFQDPHTSPMVRVIRLNKGDDINSRRKDNYEYYMHKRLEQIMTPFDYSVKSEDHDNTSGVAFRNTRAVPHPTLNCSQDTHTDEDSSRMHIFCLEHAVEAEQQLRPIGGAHILLLCHPDYPKIEAEAKFVAEELGIGYTWKNTVYRQANREDEERIQSALDSEEAIPENGDWAVKLGINLFYSANLSRSALYSKQIPYNSVIYKAFGQSSPGSSPTEPKVYQRRTNKQKKLVAGKWCGKVWMSNQVHPLLAKRDSEDVEDETSLHGWPLPDEKIERSESNHKSNTSTRKSGKKWKKSVEKGGIWEESFVERDWLSDNSIEDKSNKYQRRIIGGKRSRHIERYDTASEGDYSPLPLHRKPITKHSESSEDDAMSDDLLDDDSCIQHRGRANTNEAKLIDSDVFSDDTMDYGSDWLRRGELSNEQDAISDDSLSAGSLQLHGKTPKGKYDKYITEEDVISDDQREVCLWKQRGKISKGRQRSLSAKNEDGLKHHRQKQQQRNLRSRQDKHFAVENITSDDQMEGRFFKCQRRIPNIRKWVLIDVGLPTPKNKQVKLIEEEDVMSDDQLKDDFQKPQRSTRRSRQNKYNDKDVMDDLAENNFHILYRTRKRKQVKGMDEDNIDSDDQMDDILHQQHKRTLQSKQSKAQILQQTKQTNPRHARNKTSHPAKQKQGAHTQMKSKAARQTKNQSGNSKDLTLHVEEEDDGGPRTRLRKRVLEKESEGKLKEKRTKREKEKNTTAAKVLVGHAKTKDEESEYQCDIEGCTMSFGSKQELLQHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHATKKNC 1551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3532g00001 1551 MobiDBLite consensus disorder prediction 669 688 - -
Vium3532g00001 1551 MobiDBLite consensus disorder prediction 933 966 - -
Vium3532g00001 1551 MobiDBLite consensus disorder prediction 1245 1272 - -
Vium3532g00001 1551 MobiDBLite consensus disorder prediction 1319 1337 - -
Vium3532g00001 1551 SUPERFAMILY beta-beta-alpha zinc fingers 1499 1543 IPR036236 -
Vium3532g00001 1551 ProSitePatterns Zinc finger C2H2 type domain signature. 1521 1545 IPR013087 -
Vium3532g00001 1551 MobiDBLite consensus disorder prediction 1160 1187 - -
Vium3532g00001 1551 MobiDBLite consensus disorder prediction 1021 1059 - -
Vium3532g00001 1551 Gene3D Classic Zinc Finger 1404 1458 - -
Vium3532g00001 1551 MobiDBLite consensus disorder prediction 1314 1416 - -
Vium3532g00001 1551 MobiDBLite consensus disorder prediction 1037 1051 - -
Vium3532g00001 1551 SUPERFAMILY Clavaminate synthase-like 95 338 - -
Vium3532g00001 1551 ProSitePatterns Zinc finger C2H2 type domain signature. 1461 1483 IPR013087 -
Vium3532g00001 1551 MobiDBLite consensus disorder prediction 669 686 - -
Vium3532g00001 1551 ProSiteProfiles Zinc finger C2H2 type domain profile. 1489 1518 IPR013087 -
Vium3532g00001 1551 Pfam JmjC domain, hydroxylase 199 317 IPR003347 -
Vium3532g00001 1551 Gene3D Cupin 10 339 - -
Vium3532g00001 1551 SMART cupin_9 166 335 IPR003347 -
Vium3532g00001 1551 MobiDBLite consensus disorder prediction 1348 1374 - -
Vium3532g00001 1551 ProSitePatterns Zinc finger C2H2 type domain signature. 1491 1513 IPR013087 -
Vium3532g00001 1551 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 1485 - -
Vium3532g00001 1551 MobiDBLite consensus disorder prediction 1157 1187 - -
Vium3532g00001 1551 SUPERFAMILY beta-beta-alpha zinc fingers 1459 1495 IPR036236 -
Vium3532g00001 1551 ProSiteProfiles Zinc finger C2H2 type domain profile. 1519 1550 IPR013087 -
Vium3532g00001 1551 MobiDBLite consensus disorder prediction 1375 1416 - -
Vium3532g00001 1551 ProSiteProfiles JmjC domain profile. 166 335 IPR003347 -
Vium3532g00001 1551 FunFam Probable lysine-specific demethylase ELF6 1486 1515 - -
Vium3532g00001 1551 MobiDBLite consensus disorder prediction 933 977 - -
Vium3532g00001 1551 FunFam Probable lysine-specific demethylase ELF6 1516 1545 - -
Vium3532g00001 1551 FunFam Probable lysine-specific demethylase ELF6 10 339 - -
Vium3532g00001 1551 Gene3D Classic Zinc Finger 1459 1543 - -
Vium3532g00001 1551 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Vium3532g00001 1551 SMART JmjN_1 16 57 IPR003349 -
Vium3532g00001 1551 Pfam jmjN domain 18 51 IPR003349 -
Vium3532g00001 1551 ProSiteProfiles Zinc finger C2H2 type domain profile. 1459 1488 IPR013087 -
Vium3532g00001 1551 SMART c2h2final6 1489 1513 IPR013087 -
Vium3532g00001 1551 SMART c2h2final6 1519 1545 IPR013087 -
Vium3532g00001 1551 SMART c2h2final6 1459 1483 IPR013087 -
Vium3532g00001 1551 SMART c2h2final6 1436 1458 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3532g00001 Vium-Chr3532 844 9486 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3532g00001 1329 1549 C2H2 Transcription Factor Family AT3G48430 54.894 1.67e-67 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium3532g00001 JmjC 1.8e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3532g00001 - - gmx:100775813 1889.39