Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3530g00027 ATGACCTCCATGACACCTTCGCGGGTGACAGGAGGGTTAACCCAATCATCTTCACATTCTGGAATTTTCTTTCAAGGAGATGGGCAGTCACAGAGTGTAGTTAACACTCACTTAAGTTCATCTATTGTTAACTCATCTAGCACAGTTACGGGAACCCGTCGAACAAACCTGGGTCCGGTTTCTGGTGATATGAATAATGTAGGTTTGAACAGTGTGGCAAACTCAGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACTGATGCAAATTCTGCTCTCTCTGGTGGCCCCCATTTGCAGCGAAGTGCCAGTGTTAATACGGACTCATACTTACGATTACCTGCCTCACCCATGTCATTTACGTCAAACAATATTAGTATTTCGGGCTCATCAGTGATCGATGGTTCCTCTGTAGTACAGCAGAGCTCTCATCAAGATCATAATGTTCAACAATTGCAGCAGAATCAGCAGCAGCTGCAGGGTACTGCAAGTGCTACATCGTTGCCTGCGTCTCAAACTGGTCCGACTTCCCTTCATATGGGTGCGCATGTCCCTGGATCTTTCATTCATGATCCAAATAATGCATCTCAGCTGTCCAAAAGATCTAGGTTGGATATCAAGCAGGAAGATATAATGCAGCAGCAGCAGCAGCAGGTCATGCAACAGATTCTTCAAAGACAAGATTCCATGCAATTGCAGGGTCGTAGTCCGCAGTTACAGGCTTTATTTCAACAACAGCAGAGACTGAGACAACAACAAATCTTTCAGTCAATGCCCCAATTACAGCGAGTGCACTTGCAGCAACAACAGCAACAACAACTTCAACAACAACAAATGCAATATAGGCAGCAATTACAGCAACAAGTGATGCAGCCCTCTTCTTCTGTCAAGCGCCCATGTGACAATGGTGTCAGTGGGGTTTGTGCTCGTCGACTGATGCAATATCTCTATCATCAAAGGCAACGGCCAAATGATAATAGTATTGCTTATTGGAGAAAATTTGTGGCTGAATATTACTCTCCTCGTGCAAGGAAACGTTGGTGTTTGTCGTTGTATAACAATGTTGGCCATCATGCACTTGGTGTTTTCCCCCAAGCAGCTACGGATGCATGGCAATGTGACATATGTGGTTGTAAATCTGGAAGGGGATTTGAGGCAACTTATGAAGTATTACCTAGACTTAATGAAATCAAATTTGCTGGCGGTGTCATTGATGAACTGTTGTTTCTGGACTTGCCACGTGAAATAAGATTTTCTTCTGGTGCAATGATGTTAGAATATGCAAAAGCAGTTCAAGAGAGTGTATATGAGCAGCTTCGAGTTGTGCGTGAAGGTCAACTACGCATCATATTCAGTCAAGATTTGAAGATATTATCTTGGGAGTTCTGTGCAAGGCGGCATGAAGAACTTCTTCCTCGAAGGTTGGTTGCACCACAGGTCAACCAGTTAGTACATGTAGCCCAAAAGTGCCAGAGTACAATTGCTGAAAGTGGGGCAGATGGGGTTTCTCAACAAGATTTGCAAACAAAAAGCAACGTGGTGTTGACAACAGGGCGCCAGCTTGCAAAGATGTTGGAGTTGCAATCGCTTAATGACTTGGGTTTTTCTAAAAGATATGTGAGATGTTTGCAGATTGCGGAGGTTGTCAACAGCATGAAAGACCTAATAGATATCTGTGGCGAGCAAAACGTTGGGGCAATAGAGAGTTTGAAAAGTTATCCTCTACTAACAAATGCCTCAAAGCTCCAGATGCAAAAGATGCAGGAAATGGAGCAGCTGGCAAATGTTCATGGTCTGCCAACTGATAGAAACACGCTCAATAAGCTGATGGCAATGAATCCTGGATTGAACAACCAGATAAACAACGGTCAAAATGTGGTTAATCGTGGTGCTTTGAGTGGGTCAGCCCATTCAGCACTTACAACCAACTACCAAAATCTTCTCATAAGGCAAAATTCAATGAATTCTAGCCCTGGCTCCCTTCAGCGCGAAGGATCCTCATTCAATAATTCTAATCCAAGTTCCTCTTCTGCTTTGCAAGGAGCTGGTCCTTCTCTAGTTCCAGGCCCAATGCAAAACTCGCCTGTAGGTGGCTTCCCAGGTTCCCATCAAACCCTGCAGCAGCTGCCGCTGCCGCAACTCCTCCAACAGCGCACATTAAGCGCAAATGGTTTACTGCAACAAAATCATTCACCGGGGTCCCAAGGAAATCAAGCTCTACAGCAGCAGCAGATGATCCACCAACTAGTGAAGGAAGTGTCAAATAACAATGGGGGAATGCAATCACAGCCTCTTGGTGGACCCAATGCAAATGGGAATATGGCAAAGAATGCATTGGGTTTTGGGGGCAATACTCCATCCGTAAGCGGAGGTTCTGCCAATGTTCCACGAAACAATGGACCCATTTCGAGGAATAATAGCTTCAAAACAGCTTCAAACAGTGATTCTTCTGCCGCTGCTGGTAACAGTGGATTCAACCCAAGAACATCTGATATGCCGCAAAGTCTACATTTGCAAGATGTGGTTCAGGACATTGGCCATGAGTTCGCGGATAACCCCTTCTTTAACAGTGATCTTGATGATGAAATGGGTTTTGGCTGGAAGGCATGA 2607 0.448 MTSMTPSRVTGGLTQSSSHSGIFFQGDGQSQSVVNTHLSSSIVNSSSTVTGTRRTNLGPVSGDMNNVGLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASVNTDSYLRLPASPMSFTSNNISISGSSVIDGSSVVQQSSHQDHNVQQLQQNQQQLQGTASATSLPASQTGPTSLHMGAHVPGSFIHDPNNASQLSKRSRLDIKQEDIMQQQQQQVMQQILQRQDSMQLQGRSPQLQALFQQQQRLRQQQIFQSMPQLQRVHLQQQQQQQLQQQQMQYRQQLQQQVMQPSSSVKRPCDNGVSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRARKRWCLSLYNNVGHHALGVFPQAATDAWQCDICGCKSGRGFEATYEVLPRLNEIKFAGGVIDELLFLDLPREIRFSSGAMMLEYAKAVQESVYEQLRVVREGQLRIIFSQDLKILSWEFCARRHEELLPRRLVAPQVNQLVHVAQKCQSTIAESGADGVSQQDLQTKSNVVLTTGRQLAKMLELQSLNDLGFSKRYVRCLQIAEVVNSMKDLIDICGEQNVGAIESLKSYPLLTNASKLQMQKMQEMEQLANVHGLPTDRNTLNKLMAMNPGLNNQINNGQNVVNRGALSGSAHSALTTNYQNLLIRQNSMNSSPGSLQREGSSFNNSNPSSSSALQGAGPSLVPGPMQNSPVGGFPGSHQTLQQLPLPQLLQQRTLSANGLLQQNHSPGSQGNQALQQQQMIHQLVKEVSNNNGGMQSQPLGGPNANGNMAKNALGFGGNTPSVSGGSANVPRNNGPISRNNSFKTASNSDSSAAAGNSGFNPRTSDMPQSLHLQDVVQDIGHEFADNPFFNSDLDDEMGFGWKA 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3530g00027 868 Coils Coil 266 286 - -
Vium3530g00027 868 MobiDBLite consensus disorder prediction 652 704 - -
Vium3530g00027 868 Pfam LIM-domain binding protein 310 570 IPR029005 -
Vium3530g00027 868 PANTHER LIM DOMAIN-BINDING PROTEIN 49 854 IPR029005 -
Vium3530g00027 868 MobiDBLite consensus disorder prediction 652 681 - -
Vium3530g00027 868 MobiDBLite consensus disorder prediction 777 833 - -
Vium3530g00027 868 MobiDBLite consensus disorder prediction 135 177 - -
Vium3530g00027 868 MobiDBLite consensus disorder prediction 135 199 - -
Vium3530g00027 868 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3530g00027 Vium-Chr3530 196294 202980 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3530g00027 305 579 C2H2 Transcription Factor Family AT1G43850 59.273 4.69e-106 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3530g00027 - - pvu:PHAVU_004G121400g 1362.82