Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3530g00024 ATGCCCCCCATGACACCTTCTCGGGTGACGGGAGGGTTAACCCAATCATCATCATCACATTCTGGAGTTTTCTTTCAAAGAGATGGACTGTCACAGAGTGTAGTTAACTCTCACTTAAGCTCATCTTTTGTTAATTCATCCAGCACGGTTTCGGGAGCTGGTAACCTGGGTCTGGTTTCTGGGGATATGAATAATGCAGTTCTAAATAGTGTGGCAAACTCAGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACAGATGCAAATTCTGCTCTCTCTGGTGGCCCCCATTTGCAGCGAAGTGCCAGTGTTAACACGGACTCATACTTACGATTACCTGCCTCACCCATGTCATTTACGTCAAACAATATTAGTATTTCGGGCTCATCAGTGATTGATGGTTCCTCTGTAGTACAGCAGAGCTCTCATCAAGATCAGAATGTTCAACAATTGCAGCAGAATCAGCAGCAGCTGCAGGGTGCTTCAAGTGCGACATCGTTGCCTGCTTCTCAAACTGGTCCGTCTACCCTTCATATGGGTGCACATGTCCCTGGATCTTTCATTCATGATCCAAATAATGTATCTCAGCTGTCCAAAAAACCTAGACTGGATATCAAACAGGAAGATATAATGCAGCAGCAGCAGGTTATACAACAGATTCTTCAGAGACAAGATTCCATGCAATTGCAGGGTCGTAATCCACAGTTACAGGCTTTGCTTCAACAACAGCAGAGACTGAGACAACAACAACTCTTTCAGTCAATGCCACAGTTACAGCGAGTGCAGTTGCAACAACAACAGCAGCAGCAGCAACAACAACAACAAATGCAATTGAGGCAGCAGTTACAGCAACAAGTGATGCAGCCCTCTTCTGCTGTCAAGCGTCCATACGATAATAGTGTTAGTGGGGTTTGTGCTCGTCGATTGATGCAGTATCTCTATCATCAAAGGCAACGGCCGAATGATAATAGTATTGCGTATTGGAGAAAATTTGTGGCTGAATACTACTCTCATCGTGCAAAGAAACGGTGGTGCTTGTCGTTATATAACAATGTTGGGCATCATGCACTTGGTGTTTTCCCGCCAGCAGCAATGGATGCGTGGCAGTGTGATATTTGTGGTTCTAAATCTGGAAGGGGATTTGAGGCGACTTATGAAGTATTACCTAGACTTAATGAAATCAAATTTGGCAGTGGAGTGATTGATGAACTTTTGTTTCTGGACTTGCCACGTGAAATAAGATTTCCTTCTGGTGCAATGATGTTAGAATATGCAAAAGCAGTCCAAGAGAGTGTATATGAGCAGCTTCGCGTTGTTCGTGAAGGCCAACTTCGCATCATATTCACTCAAGATTTGAAGATATTATCTTGGGAGTTCTGCGCAAGGCGGCATGAAGAACTTATTCCTCGAAGGTTGGTTGCACCACAGGTCAACCAATTAGTTCAGGTAGCTCAAAAATGCCAGAGTACAATTGCTGAAAGTGGGGCTGATGGGGTTTCTCAGCAAGATTTGCAAACAAACAGCAACATGGTATTGACAGCTGGGCGCCAGCTTGCTAAAATTTTGGAGTTGCAATCACTTAATGACTTGGGTTTTTCTAAAAGATATGTGAGATGTTTGCAGATATCGGAGGTTGTCAACAGCATGAAAGACCTAATTGATATTTGTGAAGAGCACAAAATTGGGGCAATTGAGAGTTTAAAAAATTATCCTCGACTAGCAACAGCCTCAAAGTTCCAGATGCAAAAGATGCAGGAAATGGAACAGATGGCAAGTGTTCATGGTCTGCCTACTGATAGAAACACACTCAATAAGCTGATGGCAATGAATCCTGGATTGAACAACCACATAAACAGCACTCATAATATGGTTAATCGTGGTGCTTTGAGTGGGTCAGCCCATTTAGTTCTTACCAACTACCAAAATCTTCTCATGAGGCAAAATTCAATGAATTCTAGCCCTGGCTCCAATCCTGGATCCTCATTCAGTAATTCGAACCCAAGTCCCTCTTCTGCTTTGCAAGGAGCTGGTCCTTCTTTAATTCCAGGCTCAATGCAAAACTCTGTAGGTGGTTTCCCAGGTCCCCATCTACCCCCACAGCAGCAGCAGCACCAGCAACAACTCCTTCAACAGCGTACGTTAAGTGGAAATGGTTTACTGCAACAAAGTCATTCCCAGGGGTCCCAAGGAAATCAAGCCCTACAGCAGCAGCAGATGATCCAGCAACTGGTGCAGGAAATGTCAAATAACAATGGGGGAATGCAATCACAGTCTCTTGGTGGACCCAATGCAAATGGGAATCTGGCAAAAAATGCACTGGGTTTTGGGGGCCATGCTCCATCCTTAAGTGGAGGTTCTGTCAATGTTCCAGGAAACAATGGACCCATTTCAAGGAATAACAGCTTCAAAACAGCTTCCAACAGTGATTCTTCTGCAGCTGGTGGCAACCATGGATTCAACCCAAGAACATCTGATATGCCACAAAGTCTACATTTGCAAGGTATGGTTCAGGATATTGGCCATGAGTTCGCGGATAGCTCCTTCTTTAACAGTGATCTTGATGATAACATGGGTTTTGGATGGAAGGCATGA 2589 0.4423 MPPMTPSRVTGGLTQSSSSHSGVFFQRDGLSQSVVNSHLSSSFVNSSSTVSGAGNLGLVSGDMNNAVLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASVNTDSYLRLPASPMSFTSNNISISGSSVIDGSSVVQQSSHQDQNVQQLQQNQQQLQGASSATSLPASQTGPSTLHMGAHVPGSFIHDPNNVSQLSKKPRLDIKQEDIMQQQQVIQQILQRQDSMQLQGRNPQLQALLQQQQRLRQQQLFQSMPQLQRVQLQQQQQQQQQQQQMQLRQQLQQQVMQPSSAVKRPYDNSVSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSHRAKKRWCLSLYNNVGHHALGVFPPAAMDAWQCDICGSKSGRGFEATYEVLPRLNEIKFGSGVIDELLFLDLPREIRFPSGAMMLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELIPRRLVAPQVNQLVQVAQKCQSTIAESGADGVSQQDLQTNSNMVLTAGRQLAKILELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDICEEHKIGAIESLKNYPRLATASKFQMQKMQEMEQMASVHGLPTDRNTLNKLMAMNPGLNNHINSTHNMVNRGALSGSAHLVLTNYQNLLMRQNSMNSSPGSNPGSSFSNSNPSPSSALQGAGPSLIPGSMQNSVGGFPGPHLPPQQQQHQQQLLQQRTLSGNGLLQQSHSQGSQGNQALQQQQMIQQLVQEMSNNNGGMQSQSLGGPNANGNLAKNALGFGGHAPSLSGGSVNVPGNNGPISRNNSFKTASNSDSSAAGGNHGFNPRTSDMPQSLHLQGMVQDIGHEFADSSFFNSDLDDNMGFGWKA 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3530g00024 862 Coils Coil 260 284 - -
Vium3530g00024 862 MobiDBLite consensus disorder prediction 134 176 - -
Vium3530g00024 862 MobiDBLite consensus disorder prediction 646 708 - -
Vium3530g00024 862 MobiDBLite consensus disorder prediction 748 771 - -
Vium3530g00024 862 PANTHER LIM DOMAIN-BINDING PROTEIN 60 845 IPR029005 -
Vium3530g00024 862 MobiDBLite consensus disorder prediction 784 826 - -
Vium3530g00024 862 Pfam LIM-domain binding protein 307 567 IPR029005 -
Vium3530g00024 862 MobiDBLite consensus disorder prediction 646 685 - -
Vium3530g00024 862 MobiDBLite consensus disorder prediction 748 764 - -
Vium3530g00024 862 MobiDBLite consensus disorder prediction 783 826 - -
Vium3530g00024 862 MobiDBLite consensus disorder prediction 134 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3530g00024 Vium-Chr3530 169924 183570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3530g00024 302 571 C2H2 Transcription Factor Family AT1G43850 60.741 2.16e-107 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3530g00024 - - pvu:PHAVU_004G121400g 1194.87