Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3530g00004 ATGGAAGGTCGTAATGAAATGGGTATGATGGGAGAGAGTTTTGATACGAGTAATTTGCTGGGGAGGATTAGGGATGATGACTATGAAAGTCGCTCTGAAAGTGATAACTTTGATGGTGGATCTGGTGATGAACAAGATGTTGGCGATGATCAACCACAGAGAAAGAAGAAGAAATATCACAGACACACTCCTCAACAGATTCAGGATCTTGAAGCATTCTTTAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAACCGATCTCAGCAAGAGGCTTGGCTTGGAGAACAAGCAAGTGAAGTTCTGGTTTCAAAATCGACGAACCCAGATGAAAACACAATTGGAGAGGCACGAGAACATGGTTCTTAAGCAGGAGAATGACAAGCTTCGAGCTGAGAATGGTGTGATGAAGGAAGCTTTGGCTAATCCTATCTGTAACAACTGTGGTGGTCCAGCGATTCCTGGTCAAATTTCACTGGAGGAGCACCAGACAAGAATTGAAAATGCTCGATTGAAGGATGAACTGAACCGGATCTGTACATTAGCAAACAAGTTCTTGGGCAGGTCCCTTTCATCACTGGCCAGTCCTATGTCTCTGACACCCCCAAATTCTGGCCTTGACCTTGCTATTGGAAGAAATGGAATTGGTGGTTCAAGCAATTTTGGCATGCCCGTGCCAATTGGCTTTGATTTGGGTGATGGAGCTTTAGGCTCTTCACCTGCAATGGCAAGTATGGGTGCTAGAGCACCACTGGGAATGATGGGAAACGAAATCCATCTTGACAGATCTATGCTTATAGATATTGCCATAAATGCTATGGATGAACTGGTTAAGATGGCTCGACAAGATAACCCTCTCTGGATTAAGAGTTCTGATGGTAGGAATGAAGTTCTAAACTGTGATGAATATGCAAGAATGTTTCCTACTTTTGTTGGAACAAAACCTGCTGGATATGTGATTGAAGCTACAAGAGCAACTGGAGTTGTACTAGCCAGCAGCTTGGGCCTTGTGGAAACTTTCATGGATGTGGATCGGTGGCAAGAGATGTTTTCATCTATGGTGGCTGGTGCTTGCACTTTGGATGTGTTATCTGGTGGCACAAATGGAACGAGAAATGGAGCTTTGCAACTGATGTTAGCTGAACTTCAATTGCTTTCCCCACTGGTCCCTACTCGTCAAATGACTTTGCTCAGGTTTTGCAAGCACCATGCTGAAGGTGTATGGGTTGTGGTCGATGTTTCCATTGATATTATGCGTAATGCTTCCAATTCACATCCATCAATGAGTTGCAGGAGGCTTCCTTCTGGTTGTGTTATTCAGGATATGCCCAATGGTTTGTCCAAGATTACTTGGGTGGAACATTCCCAGTATGATGAGAGTGTCATCCACCAACTTTGTCGTCCATTGGTTAGTTCTGGTATTGGCTTTGGTGCTCAGAGATGGATTGCATCTCTCCTAAGACAGTGTGAATGCTTGGCAATCCTCATGACTCCTCCTGGTCCATCTGACGACCCTACAGTCCTTAGCCAATCCAATAGGAGAAGCGTGTTGAAGCTGGCTCAGCGCATGAACGAGTATTTCTGCTCAGGGATTTGTGCTTCATCTGCACGCAAGTGGGATGTTCTTCACATCGGTAGTCTTGCTGATGACATGAAAATCATGGCTCGGAAAATTGTGGATGATCCAAATGAGGCTCCTGGCTATGTGTTGAGCGCTTCAACTTGTATCTGGTTGCCAGTGCCTCGTCAAAGGGTGTTTGACTTTTTACGTAATGAACAGCTGCGAGGGGAATGGGACATGTTATCCAAAGGTGGTCCAATGAAGGAGATGCTCCATGTTCCTAAAGGGCAAGATCATGGAAACTGTGTTTCCATTCTTCACGTAAGTGCCTTCAACAATCTTTATTATGCTAATAATGAGGGGAACGTGCTGTATCTGCAAGAGTCATGGACCGATGCATCTGGGTCGATGGTGGTGTACTCTCCAATCAACATGCAGTCTTTGAACATGATGATGATGAACTCTGGAGATTCATCATTTGTCTCTCTTCGTCCGTCAGGATTTGCTATTCTGCCAGATGGCCATTCAAACAACAGTGACAACAATGATGGTGGTGGTGGTAGCTGTTTGCTGACAGTTGGATTACAAATGTTGCAGAATGACAACCCTTCGGCCAAGTTCACATTGGAGTCAGTTCAAACTGTCAATTCCCTCCTTTCATGCACCGTTCAAAAGGTCAAAGAAGCATTGGGAGTTTCCTGA 2262 0.4483 MEGRNEMGMMGESFDTSNLLGRIRDDDYESRSESDNFDGGSGDEQDVGDDQPQRKKKKYHRHTPQQIQDLEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMVLKQENDKLRAENGVMKEALANPICNNCGGPAIPGQISLEEHQTRIENARLKDELNRICTLANKFLGRSLSSLASPMSLTPPNSGLDLAIGRNGIGGSSNFGMPVPIGFDLGDGALGSSPAMASMGARAPLGMMGNEIHLDRSMLIDIAINAMDELVKMARQDNPLWIKSSDGRNEVLNCDEYARMFPTFVGTKPAGYVIEATRATGVVLASSLGLVETFMDVDRWQEMFSSMVAGACTLDVLSGGTNGTRNGALQLMLAELQLLSPLVPTRQMTLLRFCKHHAEGVWVVVDVSIDIMRNASNSHPSMSCRRLPSGCVIQDMPNGLSKITWVEHSQYDESVIHQLCRPLVSSGIGFGAQRWIASLLRQCECLAILMTPPGPSDDPTVLSQSNRRSVLKLAQRMNEYFCSGICASSARKWDVLHIGSLADDMKIMARKIVDDPNEAPGYVLSASTCIWLPVPRQRVFDFLRNEQLRGEWDMLSKGGPMKEMLHVPKGQDHGNCVSILHVSAFNNLYYANNEGNVLYLQESWTDASGSMVVYSPINMQSLNMMMMNSGDSSFVSLRPSGFAILPDGHSNNSDNNDGGGGSCLLTVGLQMLQNDNPSAKFTLESVQTVNSLLSCTVQKVKEALGVS 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3530g00004 753 FunFam Homeobox-leucine zipper protein HDG1 41 129 - -
Vium3530g00004 753 SUPERFAMILY Homeodomain-like 38 113 IPR009057 -
Vium3530g00004 753 Pfam START domain 268 491 IPR002913 GO:0008289
Vium3530g00004 753 SMART START_1 267 491 IPR002913 GO:0008289
Vium3530g00004 753 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Vium3530g00004 753 MobiDBLite consensus disorder prediction 1 64 - -
Vium3530g00004 753 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Vium3530g00004 753 CDD START_ArGLABRA2_like 262 490 - -
Vium3530g00004 753 SMART HOX_1 55 117 IPR001356 GO:0003677
Vium3530g00004 753 Gene3D - 43 129 - -
Vium3530g00004 753 Coils Coil 107 127 - -
Vium3530g00004 753 CDD homeodomain 56 113 IPR001356 GO:0003677
Vium3530g00004 753 Gene3D - 266 476 IPR023393 -
Vium3530g00004 753 MobiDBLite consensus disorder prediction 19 38 - -
Vium3530g00004 753 SUPERFAMILY Bet v1-like 261 491 - -
Vium3530g00004 753 SUPERFAMILY Bet v1-like 519 746 - -
Vium3530g00004 753 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 51 750 IPR042160 -
Vium3530g00004 753 ProSiteProfiles START domain profile. 258 494 IPR002913 GO:0008289
Vium3530g00004 753 Pfam Homeodomain 56 111 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3530g00004 Vium-Chr3530 74631 77504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3530g00004 1 750 Homeobox Transcription Factor Family AT3G61150 52.083 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium3530g00004 START 1.8e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3530g00004 K09338 - gmx:100784656 1177.93