Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3530g00001 ATGGGTCTTACAATTAAGCATAAAGCTGATGGAACTGTTGAGAGGTATAAAGCACGACTTGTGGCTAAAGAAGAAATTTATATGGATTCTCCACCAGGCATGACTGATTCAATTGGAATGAAGGAACCGGACGCCGTACGGAAGAACATCCATGTCATCGGACCACCAAACGGACCGGCCGCCCACATCACCGTATGGGACCCAGGAAACTACCCTTCTACTTATTGTTGGGAAGGGTTAGGCAGGGCGGACGCCCATGTGTCCAAAATCAAGACTCGCCCGAAGCCGGCTGCCCAGGCCGTGGACCTTGTTCTTTTCCTTCTCATTCTCTTCAACCACTTCCCTTCTAAACTCTTATCTTCTTCTCTCTCTTCTCTTCTCTCCTTTCTTCTCAATGCATTGAATTCCCTCATGGGTTTTCTCCGGCGACTCTTCGGCGCCAAGAAACACCACAATCCACCACCCTCCGACGGCTCAGTTCCTAAACCCGCCAAGGACAAGAAAACGTGGAGCTTCGTGAAGCAGAGTACGAGGTACAAGTCCACCACGTTGCCCTCACTTAACAACTTTGACCCTTCTACTTCTTCTGCTCCTTTCTCCGACTCCTTGGACGCCAACAAGCATGCCATCGCCGTCGCCGCCGCCACCGCCGCCGTCGCAGAGGCCGCTCTCGCCGCCGCCCATGCAGCTGCAGAGGTCGTGAGGCTGACCAGCGGCAATGGGCCTCCCTCCGGAAAACCCGCCACGGCGTCTCATCCCCGGCTGGCGGCTGAGAATATCGCCGCCGCCGTGAAGATTCAGTCGGCGTTCCGAGGTTACTTGGCAAGGAGGGCTTTGAGAGCACTTAAGGCATTGGTGAAGTTGCAAGCATTGGTGAGAGGCCACATTGTGAGAAAGCAAACTACAGATATGCTAAGGCGCATGCAGACTTTGGTGCGACTGCAGTCTCGGGCACGTGCCACACGTGGGAACTTGTCTGATAATATGCATTCTTTCAAGTCTTCACTTTCTCATTACCCTGTGTCAGAAGATTATCAGCACTCACTTTATGGATATAGTACGAAATTTGATGGATCTGTTCTCAAGAGATGCAGTTCTAACGCAAATTTTAGGGACGTTGACATGGAGAAAGCCCGGTTTGATTCCCATTGGCTAGATAATTGGATGGAAGAAAATTCTTGGAGCCAAACCAGAGATGGTTCATTGAAAACTGGGCATCTTGATGATGAAAAGAGTGACAAGATTCTTGAAGTGGATACTTGGAAGCCACACTTGAATAGTAGTGGCAGCTCATTTCAGGCAGCACATCATTATTTGTCTTCTGATTACAACAATGAGAATTTTGTGGCATATGAGTCTCCATCAAAACGTTCTTCAAAAACTCTATATCCAAGTCTCTCTTCAAGGGAGGTTCTACCCTTTGGCTCTCTGAAGCTTCACAGAGGAAAAGAAGAAGCATCTTTGAGAAATGTTGAAGATAGTCCTCAAGCATTCTCTGCTTCCTCCAGACATGGAAGTGGTTCAAGGAGAGGTCCATTCACACCAACTAAGAGTGAGTGTGCATGGAGTGTCTTCAGTGGCTATTCTGGTCATCCCAATTACATGTCAAATACTGAATCTTCAAAAGCCAAGGTTAGGTCACATAGTGCTCCAAGGCAAAGAATTGAGTTTGAGAGATATGGTTCCACAAGAAGGTCTCTACAGGGTTTTTGGGATGCAGGACCTAGTTCTGATAGGGATTCTGATTTTAGAAGCAAGGGCTATCCTACCACAAACAGCAGCTTGAACAGAATTGGGAGTGCCAATTTAAGGTGA 1815 0.4826 MGLTIKHKADGTVERYKARLVAKEEIYMDSPPGMTDSIGMKEPDAVRKNIHVIGPPNGPAAHITVWDPGNYPSTYCWEGLGRADAHVSKIKTRPKPAAQAVDLVLFLLILFNHFPSKLLSSSLSSLLSFLLNALNSLMGFLRRLFGAKKHHNPPPSDGSVPKPAKDKKTWSFVKQSTRYKSTTLPSLNNFDPSTSSAPFSDSLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGNGPPSGKPATASHPRLAAENIAAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTTDMLRRMQTLVRLQSRARATRGNLSDNMHSFKSSLSHYPVSEDYQHSLYGYSTKFDGSVLKRCSSNANFRDVDMEKARFDSHWLDNWMEENSWSQTRDGSLKTGHLDDEKSDKILEVDTWKPHLNSSGSSFQAAHHYLSSDYNNENFVAYESPSKRSSKTLYPSLSSREVLPFGSLKLHRGKEEASLRNVEDSPQAFSASSRHGSGSRRGPFTPTKSECAWSVFSGYSGHPNYMSNTESSKAKVRSHSAPRQRIEFERYGSTRRSLQGFWDAGPSSDRDSDFRSKGYPTTNSSLNRIGSANLR 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3530g00001 604 SMART iq_5 258 280 IPR000048 GO:0005515
Vium3530g00001 604 SMART iq_5 281 302 IPR000048 GO:0005515
Vium3530g00001 604 Gene3D - 259 311 - -
Vium3530g00001 604 ProSiteProfiles IQ motif profile. 261 287 IPR000048 GO:0005515
Vium3530g00001 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 304 IPR027417 -
Vium3530g00001 604 ProSiteProfiles IQ motif profile. 283 310 IPR000048 GO:0005515
Vium3530g00001 604 Pfam Protein of unknown function (DUF4005) 494 566 IPR025064 -
Vium3530g00001 604 PANTHER IQ-DOMAIN 5-RELATED 152 576 - -
Vium3530g00001 604 MobiDBLite consensus disorder prediction 586 604 - -
Vium3530g00001 604 MobiDBLite consensus disorder prediction 492 515 - -
Vium3530g00001 604 MobiDBLite consensus disorder prediction 567 604 - -
Vium3530g00001 604 Pfam IQ calmodulin-binding motif 283 300 IPR000048 GO:0005515
Vium3530g00001 604 Pfam IQ calmodulin-binding motif 261 280 IPR000048 GO:0005515
Vium3530g00001 604 MobiDBLite consensus disorder prediction 483 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3530g00001 Vium-Chr3530 3160 15050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3530g00001 138 569 IQD Protein Family AT5G62070 47.085 2.34e-62 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3530g00001 - - vum:124834771 1128.24