Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3525g00016 ATGGGAGTTTGTTTGAGTGCCCAAATTAAAGCTGAAAGCCCGTATAACACTGGGTTCAACTCAAAGTATGTGAGTACAGATGGAAATTATCTTGGCAGCACAAACGAAAAGGTATCAGGAAACTCGGTCCCTCTGACTCCTCGGAGCGAGGGTGAGATCTTGCAGTCATCCAATTTGAAGAGCTTTACCTTATCAGAACTTAAGACGGCCACTAGGAATTTCCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAAGGGTGGATTGATGAGAATTCGTTAACTGCTACAAAACCTGGCACTGGTATTGTTATTGCTGTGAAAAGACTTAATCAAGATGGCATCCAGGGTCACAGGGAGTGGTTGGCTGAAGTAAACTATCTTGGACAGCTTTCTCATCCTCATCTAGTGAGATTGATTGGGTTTTGCCTGGAAGATGAACACCGCCTTCTTGTCTATGAATTTATGCCTCGTGGAAGCTTGGAAAACCATTTGTTCAGGAGAGGTTCATATTTTCAGCCACTTTCTTGGAGCCTCCGTTTGAAAGTTGCTCTTGATGCTGCCAGAGGGCTTGCCTTTCTACACAGTGCTGAAACAAAAGTGATATATAGAGATTTTAAAACTTCAAATATATTGCTGGATTCGAATTACAATGCAAAACTTTCTGATTTTGGGCTGGCAAAGGATGGACCAACGGGTGACAAAAGCCATGTCTCCACCAGGGTAATGGGAACCTACGGATATGCAGCTCCTGAATATCTAGCCACAGGTCATCTTACTGCCAAGAGTGATGTCTATAGTTTTGGAGTTGTCCTGCTAGAAATGATATCTGGAAAGAGGGCAGTTGACAAGAATAGACCATCTGGACAACACAATTTAGTGGAATGGGCTAAACCATACCTGGCAAACAAACGTAAAATATTTCGTGTATTGGACACACGGCTTGAAGGACAATATTCAACGGATGATGCCTATAAAGTGGCCAATCTTGCCTTGCGGTGCCTGTCAATAGATTCCAAGTTCAGGCCAAACATGGATGAAGTGGTCACAACATTGGAGCAGCTGCAGGTTCATAATGCAAATGGAGGCAATCAAAATCCTTCTCGTGTTAGAAGAAGAAGTGCTGATGTAAGTAGAGGCTATCAAAATCCTTCTGTTAATGGATCTCGAGTTCGTAGAAGAAGTGCTGATGACATTAGCCGCATGGAGACTCCCTCAGCTTATCCCAGGCCCTCTGCATCCCCTCTCTATACATGA 1269 0.4358 MGVCLSAQIKAESPYNTGFNSKYVSTDGNYLGSTNEKVSGNSVPLTPRSEGEILQSSNLKSFTLSELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLTATKPGTGIVIAVKRLNQDGIQGHREWLAEVNYLGQLSHPHLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAARGLAFLHSAETKVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMISGKRAVDKNRPSGQHNLVEWAKPYLANKRKIFRVLDTRLEGQYSTDDAYKVANLALRCLSIDSKFRPNMDEVVTTLEQLQVHNANGGNQNPSRVRRRSADVSRGYQNPSVNGSRVRRRSADDISRMETPSAYPRPSASPLYT 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3525g00016 422 MobiDBLite consensus disorder prediction 361 422 - -
Vium3525g00016 422 Gene3D Transferase(Phosphotransferase) domain 1 160 381 - -
Vium3525g00016 422 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Vium3525g00016 422 PANTHER OS01G0588500 PROTEIN-RELATED 42 360 - -
Vium3525g00016 422 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Vium3525g00016 422 SUPERFAMILY Protein kinase-like (PK-like) 49 356 IPR011009 -
Vium3525g00016 422 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Vium3525g00016 422 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Vium3525g00016 422 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3525g00016 422 MobiDBLite consensus disorder prediction 361 375 - -
Vium3525g00016 422 CDD STKc_IRAK 80 359 - -
Vium3525g00016 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vium3525g00016 422 FunFam Probable serine/threonine-protein kinase PBL8 160 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3525g00016 Vium-Chr3525 79569 82808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3525g00016 52 356 Glycoside Hydrolase AT3G07070 50.000 5.37e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium3525g00016 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3525g00016 - - gmx:100798404 796.578