Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3525g00007 ATGGGAAAGGACCTGATTTCTTCCGACCAGACCGCTATTCAAATTCAGGACAATAATCCAGGATGCATGTGGGGCATGCTTAAAATTCTTGATTACCATCGTTGGCGCGTAAAAAAGGTGTTTCCCCACAAAAGGAGAAGACATGCCACATATAAGAGAAAAAGCATTTTGTATAACCAACTTGATGACCAACACGATGGAGTTACAGAATCGGAGCCCCTCCTGGTCAGACAAGAAAGCGAAAAATTGCATGCTGCAGGCAAAAGTTCTCCCAAATACAATCAAAAGGAAACACGAACTGGGAAAGAGTTTAACAAAGAAAACTCCAAAGGCAGTGAAACCATGGACTACTCGAGGAAAAACCAGGCCAGTAAGGAGTATGCACTTCATCTGGAAAAAAATGGCAAGACAACAGAAGCTTACCTTAACCATAAGCCTACGGAAACAAACAAGCATAATGGAGACATTTCCTATAAATTTGAGAAACATTCAGATGTTTTTGAGTTTCTTAGGGTGGAGAAGGATTTATTACTCAAATTTCTGCGAGACATGGACTTCAGTGGGAAAAAACTCCAGCAACCTTCCCAAACCAATGCAAGATTGACAAAATGTGGGTCATTTCCTTTAGCCTCAACTTCACAGATGAGGAACATTAGCTCTAGGTCGTTAAAACACAAGCAAAACGAAATTTATCCAAAGGGAGAAAAATTGTTTGCTGTTGCCCAGGAATCAAACATGTCAGTTTCCAGTTTTGTGAAAGATATTTCTTATGAGAAGCCACGAACTTTGGTGAGTGATCTTGGTGTTGATAGTGCCATGAAACAAAAAGCAATTATTTCCTCAAGGTCTTCTCATGAATCAAATCACAGAGGGTGGAATCAGTTGGTTCTTCATCAATTCAAAGCTATAAAGCAGAAGATAAAACATGCTCTTGTGGAATTCAGAAAAAGTGGTAAGCAAACTTCTGCTGAAGCTATCCAACACATAGCTTCGCCTGAATATAGCATCATCAATAATGAGGAAGAGATCTCACAAAGTTTAGAAGATGGCGTGGTTCAAGAATACAAAAGGAGCAAAAGCTCAAATGAAACTAAAGCTTCTGATTATGATTCCAACAAACATGATGCCCGGCTCATGCGGAGAACATCTTCTCTCAATGAATCATTGGATAGATATACTCAGTTGTTCGAGAAAAGCTTCAGCAAAGAAGCTAAGTGGCAAAGCTCAAAGTCTAAAAGCTTAAAATTGACACACGAGGATAGGATCCACAAGAGTGCACATGTTCCTAACTTTTCAAGAAGCAATTTGTCTATGCCTAATCTCGAGACTTTAGGCTTCCTAGTACAAGAGGTACTTTTTGATACAAATGATGTAGGGAATACCGAGGAAACATATGATCGTGCTCATAGAAAATCAGTGAGTCTTCCTTTGAAGATGGACAAATCACTAGATAATTTTAAAGAGGTTGAAATTGTGGAAACAGATAAGATTTTGGAGAAAATTGATGAAGTTACCTGTGACCAAAAGGAGGACATGGATGAGGCAGCAGTGGGGGATGGAAGTTTTACACAAGAAATAGAGGAAATGAGTAATATGACTGCCTATCTTAGCAAGGAGGTGATGCCAACTCTTGAAACTGCCTGCGAGGACAATATAACCAGCCACAAAGAAGGCACAGAATTGTATACCCAAGTCTCTACATTGGAGGAATTGGAAGGTGATTTATCAGATAAAGGAAGTGCATGGCCAGACTCTTCATACAACAGAAATGCAAGTGGAATAACAGCTGAAGATACAGATTACCCTTCCAATTTCAAATATTTAAAAAATGTTCTTGAATTTTCGGGATTCTTGGGAAATGAGCACACTCAGATGAGATACACAATAGACCAGCCACTAAAGCCCTCCTTGTTCAAAGATTTGGAAGCGAGTTTGCGGCATGAAATAGAAACCTCTGAAGAAGAGACAACCAAACATTATGATCACCAACTCATTTTTAACTTAGTGAACGAGGTGCTGCTGGAAATTTATGGAAGGTCACCAACTTACTTCCCAAGACCATTCTCCTTCAACCCCCGCCTCCATCCAATGCCTAAAGGGCACTATCTTCTGAATGAAGTGTGGACTAGTGTCAATTCATACCTGACCTTGAGACCTGAGCTAGATCAGACATTAGATGATGTTGTGGGTCGTGATTTGGCAAAAGGAAGAGGGTGGATGATCCTTCAAGAGGAAGAGGAGTATGTAGCACTTGAACTAGAAGAGATGATAATGGATGATTTGTTTGATGAATTTATCTTCCCTTGTGTCGGGGTTACGATGATAAGCAAAAGCATGCGAAGTGTGACAGGCTTCTTCGCACGAGAGTGGTTGGTTCAGTTAATACGTCGAACACCTTGTGACACTCTTACCTTGAAATTGTTCTGTGCTCAAGCGACACAAAACCAGGATTCCCTGTCTCGAAGAATCGAGAGACTCCCCAAAGGAGAATCCGTCGGCTCTGCTTTCCGCAGTTGGATGAGAGATGGCTTCCCCGTTCACGGCGGTGACGTCTTTCACTCCATTAACCGACTCAGGAAGCTCAAAAAGAACATACGTGCTCTTCAGGTGATGGAATGGGTAATCAGGGAAAGACCCTACAGACCTAGGGAACTGGATTACTCTTATCTTGTTGAGTTTACAATTAAGCTTCATGGGATTTCACATGGTGAGAAGTTGTTCTCCCGAATTCCGGTTGAGTTTCACAATGAGTTGCTCTACAACAATCTAGTGATTGCATGCTTGGATAAGGGTGTCATAAGGCTTTCACTTGAGTACATGAAGAGAATGAGGGAATTGAGATTTCCCATTTCGCACTTGGTTTTCAACCGTCTCATAATTCTTCATTCCTCGCCAGGGCGCAAGAAGATGATACCCAAGTTGCTCATCCAAATGAAGGCTGATAAAGTTCCGCCACATGTGTCCACCTACAATATTTTGATGAAAATAGAGGCCAGTGAACATAATCTCGAGAATTTGTTGAAGGTCTTCTGTCGAATGAAAGAAGCACAGGTTGAACCAAATGAAATATCTTACTGTATTTTGGCTATTGCTCATGCAGTGGCCAGATTATATACTGCAACTGAAGCATATGTGGAAGCTGTGGAGAAGTCTATTACAGGGAATAACTGGTCAACATTGGATGTCCTACTTATTTTGTATGGGTATCTAGGGAGCCAAAAGGAGCTGGAAAGAATTTGGACCATCATTCAAGAACTCCCCTCTGTTAGATCTAAAAGTTACATGCTAGCCATTGAAGCATTTGGTAGGATTGGACAGCTAAACAGAGCCGAAGAAATTTGGTTAGAAATGAAATCAACCAAAGGATTGAAATCTGTAGAGCAATTCAATTCAATGATCTCTGTATACTGCAACCATGGATTTGTCGACAAAGCGGCTAGACTGTACAAAATTATGAAGGCGAGTGGGTGTAAACCAAATGCCATTACTTATCGTCAACTTGCTCTGGGCTGCTTAAGATCTGGTATGGCAGAGCAAGCTTTAAAGACCTTAGACTTGGGTTTGCGTTTGACAATTAGCAAGAGGGTTAGAAATTCAACCCCGTGGTTGGAGACCACTCTTTCAATTATTGAGGTTTTTGCTGAAAAAGGTGATGTGGGAAATGTTGAGAGATTGTTTGAAGAATTTCATAAAACAAAGTATTGTAGATATACTTTTGTATATAATGCCTTGATTAAGGCTTATTATCTGGATCATAAGTGGGACAGAGACGTGGTTTTGGAGGAAATAGCCAAGTTTCCTGAACTAACTATGCAATCAGAAACAGAACAACGGCGTCACAAGGTTAGCTTTTATTTGGAAAAAGGGAAGGCCCCAAATGTTGTCAAAGCTCTCTCAAAACGTCTGGAGAAACGTGGGTTAGATGTGAAAATAATTTATAGCAATGGTATTGCTTTGGATGTATTAGCCCAAGCTGCTGGAAAAGGAAGGACACTTGCTTTTCTACTTGAAAAACTAAATGTTGATGAACTTGGAATACGCGGCACTCTTGTTTGTGGTGATTCTACTGTTTGTACTATCTGCAAATGTGATTGTACTGTGAAAAATGATCTTTCATTTCCTGAATTTGAAGGTCAACAATGCACAGGAAGAATTGCTTCATTGTTACTGACTGGTTTGGTCATTATCATTTCAGGCACAGAATTGTATACCCAAGTCTCTACATTGGAGGAATTGGAAGGTGATTTATCAGATAAAGGAAGTGCATGGCCAGACTCTTCATACAACAGAAATGCAAGTGGAATAACAGCTGAAGATACAGATTACCCTTCCAATTTCAAATATTTAAAAAATGTTCTTGAATTTTCGGGATTCTTGGGAAATGAGCACACTCAGATGAGATACACAATAGACCAGCCACTAAAGCCCTCCTTGTTCAAAGATTTGGAAGCGAGTTTGCGGCATGAAATAGAAACCTCTGAAGAAGAGACAACCAAACATTATGATCACCAACTCATTTTTAACTTAGTGAACGAGGTGCTGCTGGAAATTTATGGAAGGTCACCAACTTACTTCCCAAGACCATTCTCCTTCAACCCCCGCCTCCATCCAATGCCTAAAGGGCACTATCTTCTGAATGAAGTGTGGACTAGTGTCAATTCATACCTGACCTTGAGACCTGAGCTAGATCAGACATTAGATGATGTTGTGGGTCGTGATTTGGCAAAAGGAAGAGGGTGGATGATCCTTCAAGAGGAAGAGGAGTATGTAGCACTTGAACTAGAAGAGATGATAATGGATGATTTGTTTGATGAATTTATCTTCTCATGA 4830 0.4048 MGKDLISSDQTAIQIQDNNPGCMWGMLKILDYHRWRVKKVFPHKRRRHATYKRKSILYNQLDDQHDGVTESEPLLVRQESEKLHAAGKSSPKYNQKETRTGKEFNKENSKGSETMDYSRKNQASKEYALHLEKNGKTTEAYLNHKPTETNKHNGDISYKFEKHSDVFEFLRVEKDLLLKFLRDMDFSGKKLQQPSQTNARLTKCGSFPLASTSQMRNISSRSLKHKQNEIYPKGEKLFAVAQESNMSVSSFVKDISYEKPRTLVSDLGVDSAMKQKAIISSRSSHESNHRGWNQLVLHQFKAIKQKIKHALVEFRKSGKQTSAEAIQHIASPEYSIINNEEEISQSLEDGVVQEYKRSKSSNETKASDYDSNKHDARLMRRTSSLNESLDRYTQLFEKSFSKEAKWQSSKSKSLKLTHEDRIHKSAHVPNFSRSNLSMPNLETLGFLVQEVLFDTNDVGNTEETYDRAHRKSVSLPLKMDKSLDNFKEVEIVETDKILEKIDEVTCDQKEDMDEAAVGDGSFTQEIEEMSNMTAYLSKEVMPTLETACEDNITSHKEGTELYTQVSTLEELEGDLSDKGSAWPDSSYNRNASGITAEDTDYPSNFKYLKNVLEFSGFLGNEHTQMRYTIDQPLKPSLFKDLEASLRHEIETSEEETTKHYDHQLIFNLVNEVLLEIYGRSPTYFPRPFSFNPRLHPMPKGHYLLNEVWTSVNSYLTLRPELDQTLDDVVGRDLAKGRGWMILQEEEEYVALELEEMIMDDLFDEFIFPCVGVTMISKSMRSVTGFFAREWLVQLIRRTPCDTLTLKLFCAQATQNQDSLSRRIERLPKGESVGSAFRSWMRDGFPVHGGDVFHSINRLRKLKKNIRALQVMEWVIRERPYRPRELDYSYLVEFTIKLHGISHGEKLFSRIPVEFHNELLYNNLVIACLDKGVIRLSLEYMKRMRELRFPISHLVFNRLIILHSSPGRKKMIPKLLIQMKADKVPPHVSTYNILMKIEASEHNLENLLKVFCRMKEAQVEPNEISYCILAIAHAVARLYTATEAYVEAVEKSITGNNWSTLDVLLILYGYLGSQKELERIWTIIQELPSVRSKSYMLAIEAFGRIGQLNRAEEIWLEMKSTKGLKSVEQFNSMISVYCNHGFVDKAARLYKIMKASGCKPNAITYRQLALGCLRSGMAEQALKTLDLGLRLTISKRVRNSTPWLETTLSIIEVFAEKGDVGNVERLFEEFHKTKYCRYTFVYNALIKAYYLDHKWDRDVVLEEIAKFPELTMQSETEQRRHKVSFYLEKGKAPNVVKALSKRLEKRGLDVKIIYSNGIALDVLAQAAGKGRTLAFLLEKLNVDELGIRGTLVCGDSTVCTICKCDCTVKNDLSFPEFEGQQCTGRIASLLLTGLVIIISGTELYTQVSTLEELEGDLSDKGSAWPDSSYNRNASGITAEDTDYPSNFKYLKNVLEFSGFLGNEHTQMRYTIDQPLKPSLFKDLEASLRHEIETSEEETTKHYDHQLIFNLVNEVLLEIYGRSPTYFPRPFSFNPRLHPMPKGHYLLNEVWTSVNSYLTLRPELDQTLDDVVGRDLAKGRGWMILQEEEEYVALELEEMIMDDLFDEFIFS 1609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3525g00007 1609 NCBIfam pentatricopeptide repeat 1129 1161 IPR002885 -
Vium3525g00007 1609 Gene3D - 1254 1324 - -
Vium3525g00007 1609 MobiDBLite consensus disorder prediction 95 120 - -
Vium3525g00007 1609 Pfam Domain of unknown function (DUF4378) 605 764 IPR025486 -
Vium3525g00007 1609 Pfam Domain of unknown function (DUF4378) 1446 1605 IPR025486 -
Vium3525g00007 1609 FunFam Uncharacterized protein 1043 1193 - -
Vium3525g00007 1609 Gene3D - 1249 1355 IPR023214 -
Vium3525g00007 1609 Pfam PPR repeat family 985 1028 IPR002885 -
Vium3525g00007 1609 Pfam PPR repeat family 1127 1171 IPR002885 -
Vium3525g00007 1609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1125 1159 IPR002885 -
Vium3525g00007 1609 Gene3D Tetratricopeptide repeat domain 1059 1194 IPR011990 GO:0005515
Vium3525g00007 1609 MobiDBLite consensus disorder prediction 353 374 - -
Vium3525g00007 1609 Pfam PPR repeat 1093 1119 IPR002885 -
Vium3525g00007 1609 Pfam Sucrose-6F-phosphate phosphohydrolase 1249 1355 IPR006380 -
Vium3525g00007 1609 Gene3D Tetratricopeptide repeat domain 954 1058 IPR011990 GO:0005515
Vium3525g00007 1609 MobiDBLite consensus disorder prediction 82 120 - -
Vium3525g00007 1609 FunFam Uncharacterized protein 811 967 - -
Vium3525g00007 1609 SUPERFAMILY HAD-like 1218 1355 IPR036412 -
Vium3525g00007 1609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 986 1020 IPR002885 -
Vium3525g00007 1609 PANTHER PROTEIN TRM32 1 769 IPR044257 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3525g00007 Vium-Chr3525 30301 41010 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3525g00007 165 758 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 26.917 6.61e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3525g00007 - - vum:124834749 3188.28