Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3525g00002 ATGGAACTTTTGAAACCTCTGCACCCTCACCATGCACCCATTTTGTGCCTTCCCTTCCACGGCCACCCATCTTCTTCCCAATCTCAATCACAGCTTCCCCTCCCCATGCCTCCCAAGGTTCATGTAGCTGTTGGCAAATCGATTGATAAAGCTGTTACCTTGCTCCAATGGACCTTTAACCACTTTCAGAACGCTGAAATCGTTATATTACATGCTTATCAACCTTCTCTCACGATCCCCACTCTGTTGGGGAAATTGCCTGCATCACAGGCTAGTCCTGCTGTGGTGTCTGCTTTTCGATGTGTGGAGAGAGAACAGACCATGAAGCTTTTAGACAAGTACTTGACCGTTTGCCGCACAGCTAGGGTTAAGGCAAGCGTTATAGTAACAGAAGTTGATCAAGTCCAAAAGGGAATTGTTGATTTGGTCGTTAAGCATAATATTCAGAAGCTTGTCATTGGAGCAGTGCCAGAAAATTGCATGAAAGTGAAAAGAAATTCTGGTAAAGCAAATTACACTGCCAAAAATGCTCCTCCTTTCTGTGAAGTATGGTTTCTCTATAAAGGAAAAGTCATCTGGACAAGAGAGGCTTCTGAAACACCATGTTCTTCATCCTTGTCCGCTCAACCTGAGATTGCCACCGCAGAAAGCTTGAGATGTAGATCTTTTCAATATGGTAAGAATGAACTATTTGACTCAGAGTGTCTTCAACCAAATTCGGCAAGATCTGCCACTGGTTTTGGAATCTCTGAAACTGGAGCCACTTTTTCATCCAAAGCATCCAGTTGTAGCAGTCATTGTTCCTCTCAAAATTCTTCTCGGGCTCATTTAGATACATACTTAGAGGCCATGGAAGAAAAAATTAACAACCAACTTATTGAAACCAAGAGAGAAGCCGAGGCAGTAGCAGACGAAGCCTCTGCAGAGCTATTAAAGTGTGAGAGGTTAGAAGTTGAAGCCATGGAAGCCATCAGGAAGGTCAATTTGTTTGACTCTGCCCATGTTCGTGAAGTAAAGCTTAGAAAAGAGGCTGAGGATGCACTCAGAGCTACGGTAGAAGAACAACAAAAGCTCTTGAGTGAGAGTGAAGAAATTGCTAGCGAGCTTCAAATGACCATGAGAAATATTGCGCTGTTAGATAGTCGTGCTCAGGAAGCAAATCGTAGACGTGATGAAGCTGCAGATGAACTATCACTAATTCAAGAATCCATCTCAACCCTGTGGCAAGAAAGGCAGCAGATAAGGAGACAGAAAATGGAATCCCTACGTTGGCTTGAGCGGTGGAGAAGTCGAGGACAAGTTGGAGCAGCTCATTGCAACGGGGTCATTGGCTTTCCTGAAGAATTACCTGAGTTAGCGGAGTTTTCATCATCAGATCTTCAAAATGCCACATGTAATTTTTCCAACAGCTTTAAAATTGTGCAAGGTGGATTTGGTTGTATATACAAGGGGGAAATGTTGGGTAGGACTGTTACTATAAAAAGGTTCCATCAACATAATATGCAAGGACCAATGGAGTTTCGTCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCATTTAATCACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTCCCCAATGGAACTCTTCAAGACTACCTATTCCGGAAAAGCAACAATTCTCCTTTAACATGGAATACCCGAGCACGAATGATTGCTGAAATCGCTAGTGCTCTCTGCTTCCTACATTCTTTTAAACCCGAAACTATTATCCATGGTGATCTGAAGCCAGAAACTGTACTACTTGATTCTTCACTTAGTTGCAAGATATGCGGATTTGGATTCTGCAGTCTGGTAAGTGAGGAGTCTCTCCTCCGTCCTAGTTTCCGTTTGAGCACTGAACCAAAGGGTGCTTTCACATATACTGATCCAGAGTTTCATAGAACTGGAATACTAACAACAAAGTCTGACATCTACTCCTTTGGGCTCATCATTTTACAACTCCTCACTGGTAATACTCCAGTTGGATTAGCAGCTCTAGTACGCAATGCAGCTTCATGTGGAAAATTGTCTTCAATTCTTGATTCTTCAGCTGGAGAATGGCCCTCGCCTGTGGCATCGCGTTTGGTCGAACTGGGATTGCAATTCTGTCAACAAAATCGTAGAGACAGACCAGATTTAACACCTACACTAGTGAGAGAATTGGAGCAGATGCATGCTTCAGAAGAGCGACCGGTGCCGTCTTTCTTCTTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGACGGATTTACCTATGAAGGAGATGCCATACGTGAATGGTTGGAAAATGGGCATGACACTTCTCCCATGACTAATTTGAAATTGAATCACCTGTTTCTTACTCCCAACCACGCACTTCGACTTGCCATCCAAGACTGGCTTTGCAAATCTTGA 2436 0.4347 MELLKPLHPHHAPILCLPFHGHPSSSQSQSQLPLPMPPKVHVAVGKSIDKAVTLLQWTFNHFQNAEIVILHAYQPSLTIPTLLGKLPASQASPAVVSAFRCVEREQTMKLLDKYLTVCRTARVKASVIVTEVDQVQKGIVDLVVKHNIQKLVIGAVPENCMKVKRNSGKANYTAKNAPPFCEVWFLYKGKVIWTREASETPCSSSLSAQPEIATAESLRCRSFQYGKNELFDSECLQPNSARSATGFGISETGATFSSKASSCSSHCSSQNSSRAHLDTYLEAMEEKINNQLIETKREAEAVADEASAELLKCERLEVEAMEAIRKVNLFDSAHVREVKLRKEAEDALRATVEEQQKLLSESEEIASELQMTMRNIALLDSRAQEANRRRDEAADELSLIQESISTLWQERQQIRRQKMESLRWLERWRSRGQVGAAHCNGVIGFPEELPELAEFSSSDLQNATCNFSNSFKIVQGGFGCIYKGEMLGRTVTIKRFHQHNMQGPMEFRQEVQVLGSLQHPHLITLLGVCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWNTRARMIAEIASALCFLHSFKPETIIHGDLKPETVLLDSSLSCKICGFGFCSLVSEESLLRPSFRLSTEPKGAFTYTDPEFHRTGILTTKSDIYSFGLIILQLLTGNTPVGLAALVRNAASCGKLSSILDSSAGEWPSPVASRLVELGLQFCQQNRRDRPDLTPTLVRELEQMHASEERPVPSFFLCPILQEIMHDPQVAADGFTYEGDAIREWLENGHDTSPMTNLKLNHLFLTPNHALRLAIQDWLCKS 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3525g00002 811 Gene3D Phosphorylase Kinase; domain 1 445 539 - -
Vium3525g00002 811 SUPERFAMILY Protein kinase-like (PK-like) 450 729 IPR011009 -
Vium3525g00002 811 SMART Ubox_2 744 807 IPR003613 GO:0004842|GO:0016567
Vium3525g00002 811 CDD RING-Ubox_WDSUB1-like 742 797 - -
Vium3525g00002 811 Gene3D HUPs 37 156 IPR014729 -
Vium3525g00002 811 Gene3D Transferase(Phosphotransferase) domain 1 540 741 - -
Vium3525g00002 811 SUPERFAMILY RING/U-box 731 810 - -
Vium3525g00002 811 ProSiteProfiles Protein kinase domain profile. 467 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3525g00002 811 PANTHER OS02G0152300 PROTEIN 40 805 - -
Vium3525g00002 811 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 36 157 - -
Vium3525g00002 811 Pfam U-box domain 741 810 IPR003613 GO:0004842|GO:0016567
Vium3525g00002 811 CDD STK_N 39 189 - -
Vium3525g00002 811 Coils Coil 285 316 - -
Vium3525g00002 811 ProSiteProfiles U-box domain profile. 740 811 IPR003613 GO:0004842|GO:0016567
Vium3525g00002 811 Coils Coil 341 403 - -
Vium3525g00002 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 742 811 IPR013083 -
Vium3525g00002 811 Pfam Protein tyrosine and serine/threonine kinase 472 723 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3525g00002 Vium-Chr3525 16470 20684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3525g00002 39 808 U-box Gene Family AT2G45910 36.000 1.39e-165 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium3525g00002 PK_Tyr_Ser-Thr 1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3525g00002 - - gmx:100788846 1399.8