Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3523g00004 ATGGAAGCGTTCGGTGGGTTCGCGGTGGACGAGAAAGCCGTTACGGTTGAGAACGCTTTTTTGGATTTTCTCAAAAGTTTCAAATCTAGCCAACGGAACGAGATTCAATACGAAGCGGAGATTGAAGTGATGAGAGTCAACGAATCCAACACTATGTTCATCGATTTCTCCCACGTCGTCAAATTCAGTGACCTCCTCCAGCAGACTATCTCCGATGAGTATTTGAGATATGAGCCTTATTTGAGGAACGCTTGTAAGAGATTTGTTATGGAACTCAAGCCGTCAGTTGTATCCGACGATGGCCCTAACAAGGACATCAACGTTGCTTTCTACAACATTGCAGTTATTAAGCGGTTAAGGGAATTGGGCACCTCGGAAATTGGGAGACTTGTATCCGTTACAGGAGTGGTGACGAGGACAAGTGAGGTTCGACCTGAACTTCTCCAAGGAACTTTCAAGTGCTTGGAATGCGGCGGTGTTATAAAGAATGTTGAACAGCAATTCAAGTATACCGAGCCAACAATCTGTACAAATGCCACCTGTAGCAATCGAACAAGGTGGGTATTGCTTCGCCAGGAGAGCAAGTTTGCTGATTGGCAGAGGGTCAGAATGCAGGAGACATCCAAAGAGATACCTGCGGGCTCTCTTCCTAGGTCATTGGATGTTATTCTTCGTCATGAGATCGTGGAACAGGCCAGGGCTGGTGACACGGTGATTTTCACAGGTACAGTAGTTGTCATACCTGACATAATGGCATTAGCATCTCCTGGAGAGAGATCAGAGTGTCGTCGTGATGCTTCTCAACGCAAGGGTCCCACCGCTGGAAATGAAGGTGTCGGTGGCCTCAAGGCCCTGGGAGTTAGAGACCTCTCCTATCGTCTAGCGTTTATTGCTAACTCTGTTCAGATTTGTGATGGAAGAAGAGAAATAGACATCAGGAATAGAAAGAAGGATGTCGATGAAGATTACCAACAGTTTACTACGCAGGAACTGGATGAAATTCAACGAATGAGGAATACTCCTGATTTTTTCAACAAACTAGTTGAAAGCGTTGCTCCAACTGTTTTTGGTCATCCAGATATAAAGAGAGCTATCCTTCTTATGCTCATGAGTGGTGTTCACAAATTTACTCATGAAGGCATCAACCTCAGAGGAGACATAAATGTTTGCGTTGTTGGAGATCCCAGCTGTGCAAAATCTCAATTTCTTAAGTATACTTCAGGCATAGTGCCAAGATCTGTATATACATCTGGGAAATCCTCATCTGCTGCAGGCTTGACTGCAACTGTTGCGAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCTGACAATGGCATCTGCTGCATTGATGAATTCGACAAGATGGACATCAAAGATCAGGTTGCCATTCACGAGGCCATGGAACAGCAGACTATTAGTATCACAAAAGCTGGAATACAAGCAACACTTAATGCTCGTACGTCCATTCTTGCCGCTGCCAATCCTGCTGGGGGACGCTATGATAAATCTAAACCACTTAAGTACAATGTGGCCCTTCCACCGGCTATACTTTCGAGGTTCGATCTCGTATATGTTATGATTGATGATCCAGATGATCAGACAGATTATCACATTGCCCATCATATTGTGAGAGTTCATCAAAAGCGAGAAGCTGCTCTTGCTCCAGCATTCTCTACAGCAGAACTGAAGCGTTATATAGCGTATGCAAAAACTCTTAAACCAAAGCTCACGTCAGATGCCAGAAAACTACTGGTAGACTCTTATGTTGCGCTTCGTAGAGGTGATACAAATCCAGGGAGTAGAGTTGCTTATCGTATGACAGTTAGGCAGTTGGAAGCATTAATCAGGCTGTCAGAGGCCATCGCACGGTGTCATTTGGACAATCAGGTACAACCTCGCCATGTTCGTCTAGCAGTGAAACTGCTGAAAACTTCTATTATAAGTGTGGAGTCTAGTGAGATCGATCTGTCAGAGTTTCAAGAAGAAAATCAGAATGCCGGGGCNAAAAAACTATATACAATTTATCTGTGTCCACAACTTTCTCCCTAG 2070 0.4454 MEAFGGFAVDEKAVTVENAFLDFLKSFKSSQRNEIQYEAEIEVMRVNESNTMFIDFSHVVKFSDLLQQTISDEYLRYEPYLRNACKRFVMELKPSVVSDDGPNKDINVAFYNIAVIKRLRELGTSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPTICTNATCSNRTRWVLLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVVIPDIMALASPGERSECRRDASQRKGPTAGNEGVGGLKALGVRDLSYRLAFIANSVQICDGRREIDIRNRKKDVDEDYQQFTTQELDEIQRMRNTPDFFNKLVESVAPTVFGHPDIKRAILLMLMSGVHKFTHEGINLRGDINVCVVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREAALAPAFSTAELKRYIAYAKTLKPKLTSDARKLLVDSYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARCHLDNQVQPRHVRLAVKLLKTSIISVESSEIDLSEFQEENQNAGAKKLYTIYLCPQLSP 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3523g00004 689 Coils Coil 656 676 - -
Vium3523g00004 689 Gene3D - 146 197 - -
Vium3523g00004 689 FunFam DNA helicase 328 658 - -
Vium3523g00004 689 Pfam MCM N-terminal domain 18 112 IPR027925 -
Vium3523g00004 689 ProSiteProfiles MCM family domain profile. 343 549 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium3523g00004 689 CDD MCM6 346 652 - -
Vium3523g00004 689 Pfam MCM P-loop domain 331 553 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium3523g00004 689 PRINTS Mini-chromosome maintenance (MCM) protein family signature 384 399 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium3523g00004 689 PRINTS Mini-chromosome maintenance (MCM) protein family signature 472 485 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium3523g00004 689 PRINTS Mini-chromosome maintenance (MCM) protein family signature 523 531 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium3523g00004 689 PRINTS Mini-chromosome maintenance (MCM) protein family signature 444 458 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium3523g00004 689 PRINTS Mini-chromosome maintenance (MCM) protein family signature 496 508 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium3523g00004 689 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 278 299 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vium3523g00004 689 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 74 86 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vium3523g00004 689 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 116 128 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vium3523g00004 689 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 166 183 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vium3523g00004 689 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 219 230 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vium3523g00004 689 Pfam MCM AAA-lid domain 568 653 IPR041562 -
Vium3523g00004 689 Gene3D - 323 673 IPR027417 -
Vium3523g00004 689 ProSitePatterns MCM family signature. 452 460 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vium3523g00004 689 SMART mcm 115 654 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vium3523g00004 689 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 10 669 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vium3523g00004 689 MobiDBLite consensus disorder prediction 258 278 - -
Vium3523g00004 689 FunFam DNA helicase 146 197 - -
Vium3523g00004 689 Gene3D - 8 115 - -
Vium3523g00004 689 Pfam MCM OB domain 119 247 IPR033762 -
Vium3523g00004 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 654 IPR027417 -
Vium3523g00004 689 SUPERFAMILY Nucleic acid-binding proteins 20 249 IPR012340 -
Vium3523g00004 689 Gene3D - 119 247 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3523g00004 Vium-Chr3523 24410 28840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3523g00004 1 670 Core DNA Replication Machinery Family AT5G44635 82.440 0.0 1162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3523g00004 K02542 - gmx:100787290 1246.49