Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium351g00001 ATGCCATTTTGCAGTGGCCAAAAGTTTTTCAAGAGGTTCTGTGTTGACGAGTTTCAAATGGCAAGTCTTCCTTATAGCAGCTTTCTGTCTAATGATCTCTTGCCATCCCTTGGAGCCAGAATCAACCAAGAAACAAGGCTTAGAAGATGCACAGTTTCCCCTTTTGATCCACGTTACAGGGCCTGGGAGATGCTGCTGATTGTCTTTGTTGTTTACTCTGCATGGATTTGCCCCTTTGAGTTTGCCTTTCTCCATCAAAAGCACGACACACTGTTCATCATAGACAACATTGTCAATGCCTTCTTTGCCATCGACATCGTTCTCACATTCTTTGTTGCATATCTCGATCACCATTCCTACCTTCTTGTTGATAATCCAAAGAAAATTGCAATAAGGTACCTATCTACTTGGTTCTCTTTGACGTGTGCTTCAACTGCCTTTGAATCCATCAGCCTCCTATTCACTGATCACAATAGTGATGGGTTCAAAATTCTGAACATGCTTCGGTTGTGGCGCCTTAGACGTGTCAGTTCTCTGTTTGCAAGACTTGAGAAGGACATTCGCTTCAATTACTTCTGGACCAGGTGCTTCAAGCTCTTTCAGGTGACATTGTTTGTGGTGCACTTTGCTGGGTGCTTCAACTATCTGATAGCAGATAGGTACTATGATCCGAAAACAACATGGATTGGTTCAGTGTTTCCAAATTTCAAAGAAGAGAGTCTGTGGGAAAGATACGTGACTTCGATGTATTGGTCCATTGTGACACTTACTACCACTGGCTATGGAGACTTGCATGCTACAAACACAAGAGAGATGCTCTTTTTCATCTTCTACATTTTGTTCAACTTGGGATTAACTTCCTACATCATCGGAAACATGACAAACCTCGTTGTCCATTGGACAAGCCGCACCAGAAACTTTAGAGACACAGTGAGAGCAGCTTCAGAATTTGCATCGAGAAACCATCTGCCACATCACATACAGGAACAGATGTTGTCACACTTGTGTTTGAAATTCAAGACAGAAGGAGTGAAGCAGCAAGAGACACTGAATGGCCTGCCAAAGGCAATTCGTGCAAGCATTGCACACCATCTCTTTTTCCCTCTTCTCCAGAGACTATACCTCTTCCAAGGAGTATCAGATGATTTTCTTTTCCAACTGGTTACTGAGATGGACGCTTTGTATTTCCCCCCAAAGGAAGATGTGATATTGCAAAACGAGTCTCCCACAGACCTCTACATACTGGTTTCAGGGGCAGTGGATATGATTCGTTATGTTGAAAGGAATGAGCAATGCAGAATGAAAGTACTGAACCTGATAGATCAAGTTATTCAATTTCAGGTTCTGAAGAAGGCTGTTGCAGAGGACATATTTGGGGAGATTGGAGTGTTGTACTGTAGACCACAGCCTTTCACTGTTCGGACCACTGAGCTTTCTCAGATTTTAAGACTCGGCAGAACTTCCTTAATGAACTCCTTAAATGGATATCCAGAAGCTGCACAAATCATAATGAAAAATCTCTTCATGAGGATAAAGGGGCATGAAGGTTTGGATTTTGAATGTTCACCAAGGGAACCCCAAATGCATGAAATGGATAACACAGAAACAAGTGTTCCTGATTCATCTGCAAGTAATTGTCATGAGGAAACCAGATTGCATATTCCTGAGGATGGAAAAGGAGATTTTGATGCTACTTTCCGTAAAGATCATGCTGAAATGGAAGAAAATGAGAAGAACCAAGGCCCTATAAGATGGAAACAGAAGTCTCTTGTAGATCAGCAACAAAACAAGAGCCTTTCTGACCTTGCAGTGAACCATGAAAATAGGAAGATAGTAGATGAACATATTATAAAATTTTTGGAGCCAGAAATCCCTTTCGATTACCCTTTAGGAAAAACATACTCAAACTCCTATTCAAGTGCTTCTAACCATAGAACTGAGAGAGAAACAGAAAGATTCTTCAAAAAGAGAGTTGTCATCCACTTTCTAAGCAAACACAGAACCAGCTTACAGGAACATGGCAAGTTGATAATGCTACCTCATTCATTACAAGAGCTGCTCCATATTGCAGGAGAAAAATTTGGAGTCTCCAAGCTTACAAAAGTAATTACCATAGAGAATGCAGAGATAGATGATATCAGTGTGATTCGAGATGGGGATCATCTATTTTTTGTTTGCAGTGACACTGAAAATTGA 2196 0.4112 MPFCSGQKFFKRFCVDEFQMASLPYSSFLSNDLLPSLGARINQETRLRRCTVSPFDPRYRAWEMLLIVFVVYSAWICPFEFAFLHQKHDTLFIIDNIVNAFFAIDIVLTFFVAYLDHHSYLLVDNPKKIAIRYLSTWFSLTCASTAXFESISLLFTDHNSEXGFKILNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCFKLFQVTLFVVHFAGCFNYLIADRYYDPKTTWIGSVFPNFKEESLWERYVTSMYWSIVTLTTTGYGDLHATNTREMLFFIFYILFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVRAASEFASRNHLPHHIQEQMLSHLCLKFKTEGVKQQETLNGLPKAIRASIAHHLFFPLLQRLYLFQGVSDDFLFQLVTEMDALYFPPKEDVILQNESPTDLYILVSGAVDMIRYVERNEQCRMKVLNLIDQVIQFQVLKKAVAEDIFGEIGVLYCRPQPFTVRTTELSQILRLGRTSLMNSLNGYPEAAQIIMKNLFMRIKGHEGLDFECSPREPQMHEMDNTETSVPDSSASNCHEETRLHIPEDGKGDFDATFRKDHAEMEENEKNQGPIRWKQKSLVDQQQNKSLSDLAVNHENRKIVDEHIIKFLEPEIPFDYPLGKTYSNSYSSASNHRTERETERFFKKRVVIHFLSKHRTSLQEHGKLIMLPHSLQELLHIAGEKFGVSKLTKVITIENAEIDDISVIRDGDHLFFVCSDTEN 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium351g00001 733 ProSiteProfiles KHA domain profile. 659 733 IPR021789 -
Vium351g00001 733 CDD CAP_ED 377 506 IPR000595 -
Vium351g00001 733 PANTHER POTASSIUM CHANNEL AKT1 26 517 IPR045319 GO:0005249|GO:0006813
Vium351g00001 733 ProSiteProfiles cAMP/cGMP binding motif profile. 377 512 IPR000595 -
Vium351g00001 733 Gene3D Helix hairpin bin 301 365 - -
Vium351g00001 733 MobiDBLite consensus disorder prediction 521 546 - -
Vium351g00001 733 Gene3D Jelly Rolls 366 514 IPR014710 -
Vium351g00001 733 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium351g00001 733 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium351g00001 733 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium351g00001 733 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium351g00001 733 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium351g00001 733 Pfam Cyclic nucleotide-binding domain 397 493 IPR000595 -
Vium351g00001 733 SUPERFAMILY cAMP-binding domain-like 304 512 IPR018490 -
Vium351g00001 733 FunFam Potassium channel KAT2 365 517 - -
Vium351g00001 733 FunFam Potassium channel KAT3 61 301 - -
Vium351g00001 733 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium351g00001 733 Gene3D - 60 300 - -
Vium351g00001 733 SMART cnmp_10 377 510 IPR000595 -
Vium351g00001 733 Pfam KHA, dimerisation domain of potassium ion channel 658 726 IPR021789 -
Vium351g00001 733 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium351g00001 Vium-Chr351 438 5946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium351g00001 1 726 Ion Channels AT5G46240 56.969 0.0 824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium351g00001 K21867 - gmx:100800340 1171.38