Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3519g00005 ATGGTAACAAATTTCCGTCTTATTTTTCTGAGTGAAGGAACTAGAAAAGTTATTTCCCTTGGAACGATTCCACTAGCAACCATTGAGAAGTTTAACAAGATAGTTGTAAAGGTTCAGTCAAATAATCGTTCTGTAGACAAGACACCAGCTCAGAGACTGCTCCAGGTGATTGGAAAAGATATGAGAATTTTAGTCTTCAGTTTCAGACCACGTACAAAACAGAGACGTTTGGTGTTTGATGCGCTACTGAGGTGTACAAAGCCAACAAGATTATGGGATCTTTATGCTTTTGCATCAGGACCTTCTAGGTTTAAGAACACTACTCCACTGGTCCGTTTACTAGATGAATATTGTCGGCTTCTTTGCCTAGGTTCTTATCATGCATCAATCGATATAATTGAAAATGGGTCGTTCATCTGGTCAAATGAACTATGGAGAATAAGTAGCGTGAATTCCAGTTATACAATGTGCCAGAGTTATCCATTTGCTTTGATTGTTCCAAAGATCATTAGTGATGAAGAAGTGCTCCAGGCATCCAGCTTCCGTGCAAGATGTCGACTGCCTGTAGTTTCATGGTGCCATCCATTGACTGGAGCAGTTGTTGCACGATCTTCTCAACCCTTAGTTGGTATTATGATGAACATGAGGAGCAACATGGATGAAAAACTTGTGGCCGGACTCTGTAGCAAGCTAGATAATGGCTCAAGGAGAAAGTTATATATTGTTGATGCACGGCCAAGAAAAAATGCATTGGCTAATGGAGCCATGGGAGGTGGTTCAGAATCATCGTCAAACTATTTTCAATCTGAGGTAGTCTTCTTGGGGATAGACAACATCCATGCGATGAGAGACAGCTTTGTTCGGCTCCGAGAATACATGGACACTCATGGCAGAGCGTCATCAGATGGAATGTCCTCTTTCTTGAGACAAGGTGGGTCAACGTGGGGTGGTGGCAATCTAAGTAGTATGTCTGCTTCGGTATCAACCCTTGGGGACATTGGATGGTTACTGCATGTTCAGAATGTGTTGGCTGGAGCAGCTTGGATTGCTGCTCGTGTTGCAATTGAAAACTCTTCTGTTCTTGTGCATTGCAGTGATGGATGGGATAGAACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATACTATCGGACATTCACAGGGTTTCAGGCACTTGTTGAAAAAGACTGGCTTGCTTTTGGTCATCCATTTTCTGATCGGGTGGGAATGCCATCTGTCTCTGGAACTGGCAACATGCCTTTTGAGTTATCTAGGCAGCCTTCAACTGGAAATTTTGCACCATCACCCATACACCAGTCAACAGGAACATTTTCATCACAACCTCCAGCTTCATCTCACTCCCATAACTCCAACAACTATTCTCCTATTTTTTTGCAGTGGGTTGATTGTGTTTCACAATTATTGCGGATGTATCCTTTTGCTTTTCAATTCTCTGCGGCTTTCCTGGTGGACTTCATAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAGTGAGAAGGAGAGGCAGAAATGCAATGTTTTTGAGGCATGTGGATGTCTGTGGGTTTATTTAGCTGATTTACGGACATCAGAAGGAGGTTCGCATGTGCATTACAATCCCTTCTATGATCCACTCAAGCATAATGGTCCTCTTCTACCCCCAGCAGCAGCATTGGCGCCTACGTTATGGCCCCAATTCCACCTTCGTTGGGCATGCCCAGAAGAAGCACAAGCTGGGGAGATTGAAGCGCAATGCAGGAAGATAGTTATGAAATGCTCTGAGACGCAGAAGGCTAAAGAAATGGCAGAAAGAAAAGTTAAAGAAGTTACAAATTCCATGGAGTCACTGAATGCTGAATTACGACGTGAGAAGCAGATAAACAGCTCAGCTATGAACATGGCAAAGAGTGTGAGCAAAGAAAATATGGCTATAAAGCGTGCAATTCAGTCAATGGGGTGCAAGGTTCATGTCTCTGGTAGTGGTGAATGCACTGTTGACATTGAAAGCAACCCAGACATTCTGTGTTGTTCCTCAAGAAAAGAATCAAATAGTAATGTGCGTGATGACAAAACGGACCCACCTGTTTCAGTACTAGTCACAGCAGATGATGATGATGATGGAAACAATGGGATTGTTAGGGTATGTGAAACTCTATGCCCATTTGGCTCTGGAGGTGGAGGCTGCAGGTGGCCAAATGGTGGTTGTGCTCAATTAGGTAGCCAGTATGTTGGCCTCAAGGCAAACTTTGATGCATTTGACCAACTGTCAATTAATGATAGTTATTTCAAGTCTGAGTGA 2319 0.4312 MVTNFRLIFLSEGTRKVISLGTIPLATIEKFNKIVVKVQSNNRSVDKTPAQRLLQVIGKDMRILVFSFRPRTKQRRLVFDALLRCTKPTRLWDLYAFASGPSRFKNTTPLVRLLDEYCRLLCLGSYHASIDIIENGSFIWSNELWRISSVNSSYTMCQSYPFALIVPKIISDEEVLQASSFRARCRLPVVSWCHPLTGAVVARSSQPLVGIMMNMRSNMDEKLVAGLCSKLDNGSRRKLYIVDARPRKNALANGAMGGGSESSSNYFQSEVVFLGIDNIHAMRDSFVRLREYMDTHGRASSDGMSSFLRQGGSTWGGGNLSSMSASVSTLGDIGWLLHVQNVLAGAAWIAARVAIENSSVLVHCSDGWDRTSQLVSLANLLLDPYYRTFTGFQALVEKDWLAFGHPFSDRVGMPSVSGTGNMPFELSRQPSTGNFAPSPIHQSTGTFSSQPPASSHSHNSNNYSPIFLQWVDCVSQLLRMYPFAFQFSAAFLVDFIDCMLSCRFGNFLCNSEKERQKCNVFEACGCLWVYLADLRTSEGGSHVHYNPFYDPLKHNGPLLPPAAALAPTLWPQFHLRWACPEEAQAGEIEAQCRKIVMKCSETQKAKEMAERKVKEVTNSMESLNAELRREKQINSSAMNMAKSVSKENMAIKRAIQSMGCKVHVSGSGECTVDIESNPDILCCSSRKESNSNVRDDKTDPPVSVLVTADDDDDGNNGIVRVCETLCPFGSGGGGCRWPNGGCAQLGSQYVGLKANFDAFDQLSINDSYFKSE 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3519g00005 772 CDD PTP-MTM-like 185 476 - -
Vium3519g00005 772 Gene3D - 1 86 IPR011993 -
Vium3519g00005 772 ProSitePatterns Tyrosine specific protein phosphatases active site. 362 372 IPR016130 GO:0016311|GO:0016791
Vium3519g00005 772 SUPERFAMILY PH domain-like 2 98 - -
Vium3519g00005 772 Coils Coil 599 633 - -
Vium3519g00005 772 PANTHER MYOTUBULARIN-RELATED 2 681 IPR030564 -
Vium3519g00005 772 ProSiteProfiles Myotubularin phosphatase domain. 126 574 IPR010569 -
Vium3519g00005 772 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 137 578 IPR029021 -
Vium3519g00005 772 Pfam Myotubularin-like phosphatase domain 95 516 IPR010569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3519g00005 Vium-Chr3519 19257 37073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3519g00005 1 770 Protein tyrosine phosphatase (PTP) family AT3G10550 67.397 0.0 1049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3519g00005 K18081 - gmx:100781842 1403.65