Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3519g00004 ATGGAAGTAACCGGAAGCTGGGACGCCCTCGAATGGACCAAAATTGAGCCAATTACGCCCTTCGTCTCGAATGCGAATTTCGATTTCTTGATCGAGGCGGAGCAAGTTGTCGCCGAAGGACATGGTGTTGTTCTTGTTAATACAGATGATGCTGGCACATTGATGGTAACAAATTTCCGTCTTATTTTTCTGAGTGAAGGAACTAGAAAAGTTATTTCCCTTGGAACGATTCCACTAGCAACCATTGAGAAGTTTAACAAGATAGTTGTAAAGGTTCAGTCAAATAATCGTTCTGTAGACAAGACACCAGCTCAGAGACTGCTCCAGGTGATTGGAAAAGATATGAGAATTTTAGTCTTCAGTTTCAGACCACGTACAAAACAGAGACGTTTGGTGTTTGATGCGCTACTGAGGTGTACAAAGCCAACAAGATTATGGGATCTTTATGCTTTTGCATCAGGACCTTCTAGGTTTAAGAACACTACTCCACTGGTCCGTTTACTAGATGAATATTGTCGGCTTCTTTGCCTAGGTTCTTATCATGCATCAATCGATATAATTGAAAATGGGTCGTTCATCTGGTCAAATGAACTATGGAGAATAAGTAGCGTGAATTCCAGTTATACAATGTGCCAGAGTTATCCATTTGCTTTGATTGTTCCAAAGATCATTAGTGATGAAGAAGTGCTCCAGGCATCCAGCTTCCGTGCAAGATGTCGACTGCCTGTAGTTTCATGGTGCCATCCATTGACTGGAGCAGTTGTTGCACGATCTTCTCAACCCTTAGTTGGTATTATGATGAACATGAGGAGCAACATGGATGAAAAACTTGTGGCCGGACTCTGTAGCAAGCTAGATAATGGCTCAAGGAGAAAGTTATATATTGTTGATGCACGGCCAAGAAAAAATGCATTGGCTAATGGAGCCATGGGAGGTGGTTCAGAATCATCGTCAAACTATTTTCAATCTGAGGTAGTCTTCTTGGGGATAGACAACATCCATGCGATGAGAGACAGCTTTGTTCGGCTCCGAGAATACATGGACACTCATGGCAGAGCGTCATCAGATGGAATGTCCTCTTTCTTGAGACAAGGTGGGTCAACGTGGGGTGGTGGCAATCTAAGTAGTATGTCTGCTTCGGTATCAACCCTTGGGGACATTGGATGGTTACTGCATGTTCAGAATGTGTTGGCTGGAGCAGCTTGGATTGCTGCTCGTGTTGCAATTGAAAACTCTTCTGTTCTTGTGCATTGCAGTGATGGATGGGATAGAACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATACTATCGGACATTCACAGGGTTTCAGGCACTTGTTGAAAAAGACTGGCTTGCTTTTGGTCATCCATTTTCTGATCGGGTGGGAATGCCATCTGTCTCTGGAACTGGCAACATGCCTTTTGAGTTATCTAGGCAGCCTTCAACTGGAAATTTTGCACCATCACCCATACACCAGTCAACAGGAACATTTTCATCACAACCTCCAGCTTCATCTCACTCCCATAACTCCAACAACTATTCTCCTATTTTTTTGCAGTGGGTTGATTGTGTTTCACAATTATTGCGGATGTATCCTTTTGCTTTTCAATTCTCTGCGGCTTTCCTGGTGGACTTCATAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAGTGAGAAGGAGAGGCAGAAATGCAATGTTTTTGAGGCATGTGGATGTCTGTGGGTTTATTTAGCTGATTTACGGACATCAGAAGGAGGTTCGCATGTGCATTACAATCCCTTCTATGATCCACTCAAGCATAATGGTCCTCTTCTACCCCCAGCAGCAGCATTGGCGCCTACGTTATGGCCCCAATTCCACCTTCGTTGGGCATGCCCAGAAGAAGCACAAGCTGGGGAGATTGAAGCGCAATGCAGGAAGATAGTTATGAAATGCTCTGAGACGCAGAAGGCTAAAGAAATGGCAGAAAGAAAAGTTAAAGAAGTTACAAATTCCATGGAGTCACTGAATGCTGAATTACGACGTGAGAAGCAGATAAACAGCTCAGCTATGAACATGGCAAAGAGTGTGAGCAAAGAAAATATGGCTATAAAGCGTGCAATTCAGTCAATGGGGTGCAAGGTTCATGTCTCTGGTAGTGGTGAATGCACTGTTGACATTGAAAGCAACCCAGACATTCTGTGTTGTTCCTCAAGAAAAGAATCAAATAGTAATGTGCGTGATGACAAAACGGACCCACCTGTTTCAGTACTAGTCACAGCAGATGATGATGATGATGGAAACAATGGGATTGTTAGGGTATGTGAAACTCTATGCCCATTTGGCTCTGGAGGTGGAGGCTGCAGGTGGCCAAATGGTGGTTGTGCTCAATTAGGTAGCCAGTATGTTGGCCTCAAGGCAAACTTTGATGCATTTGACCAACTGTCAATTAATGATAGTTATTTCAAGTCTGAGTGA 2481 0.4349 MEVTGSWDALEWTKIEPITPFVSNANFDFLIEAEQVVAEGHGVVLVNTDDAGTLMVTNFRLIFLSEGTRKVISLGTIPLATIEKFNKIVVKVQSNNRSVDKTPAQRLLQVIGKDMRILVFSFRPRTKQRRLVFDALLRCTKPTRLWDLYAFASGPSRFKNTTPLVRLLDEYCRLLCLGSYHASIDIIENGSFIWSNELWRISSVNSSYTMCQSYPFALIVPKIISDEEVLQASSFRARCRLPVVSWCHPLTGAVVARSSQPLVGIMMNMRSNMDEKLVAGLCSKLDNGSRRKLYIVDARPRKNALANGAMGGGSESSSNYFQSEVVFLGIDNIHAMRDSFVRLREYMDTHGRASSDGMSSFLRQGGSTWGGGNLSSMSASVSTLGDIGWLLHVQNVLAGAAWIAARVAIENSSVLVHCSDGWDRTSQLVSLANLLLDPYYRTFTGFQALVEKDWLAFGHPFSDRVGMPSVSGTGNMPFELSRQPSTGNFAPSPIHQSTGTFSSQPPASSHSHNSNNYSPIFLQWVDCVSQLLRMYPFAFQFSAAFLVDFIDCMLSCRFGNFLCNSEKERQKCNVFEACGCLWVYLADLRTSEGGSHVHYNPFYDPLKHNGPLLPPAAALAPTLWPQFHLRWACPEEAQAGEIEAQCRKIVMKCSETQKAKEMAERKVKEVTNSMESLNAELRREKQINSSAMNMAKSVSKENMAIKRAIQSMGCKVHVSGSGECTVDIESNPDILCCSSRKESNSNVRDDKTDPPVSVLVTADDDDDGNNGIVRVCETLCPFGSGGGGCRWPNGGCAQLGSQYVGLKANFDAFDQLSINDSYFKSE 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3519g00004 826 CDD PTP-MTM-like 239 530 - -
Vium3519g00004 826 PANTHER MYOTUBULARIN-RELATED 37 735 IPR030564 -
Vium3519g00004 826 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 191 632 IPR029021 -
Vium3519g00004 826 Coils Coil 653 687 - -
Vium3519g00004 826 Gene3D - 41 140 IPR011993 -
Vium3519g00004 826 SMART gram2001c 20 89 IPR004182 -
Vium3519g00004 826 Pfam Myotubularin-like phosphatase domain 149 570 IPR010569 -
Vium3519g00004 826 SUPERFAMILY PH domain-like 31 152 - -
Vium3519g00004 826 ProSiteProfiles Myotubularin phosphatase domain. 180 628 IPR010569 -
Vium3519g00004 826 ProSitePatterns Tyrosine specific protein phosphatases active site. 416 426 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3519g00004 Vium-Chr3519 14738 37073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3519g00004 1 824 Protein tyrosine phosphatase (PTP) family AT3G10550 66.627 0.0 1112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3519g00004 K18081 - gmx:100781842 1493.79