Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3519g00003 ATGGATGTGCCGAAGCACCGTGCCACTCGAACAACCTCTCTACGGGACGTCTCCGACTTCTCCAAGATGGAAGTAACCGGAAGCTGGGACGCCCTCGAATGGACCAAAATTGAGCCAATTACGCCCTTCGTCTCGAATGCGAATTTCGATTTCTTGATCGAGGCGGAGCAAGTTGTCGCCGAAGGACATGGTGTTGTTCTTGTTAATACAGATGATGCTGGCACATTGATGGTAACAAATTTCCGTCTTATTTTTCTGAGTGAAGGAACTAGAAAAGTTATTTCCCTTGGAACGATTCCACTAGCAACCATTGAGAAGTTTAACAAGATAGTTGTAAAGGTTCAGTCAAATAATCGTTCTGTAGACAAGACACCAGCTCAGAGACTGCTCCAGGTGATTGGAAAAGATATGAGAATTTTAGTCTTCAGTTTCAGACCACGTACAAAACAGAGACGTTTGGTGTTTGATGCGCTACTGAGGTGTACAAAGCCAACAAGATTATGGGATCTTTATGCTTTTGCATCAGGACCTTCTAGGTTTAAGAACACTACTCCACTGGTCCGTTTACTAGATGAATATTGTCGGCTTCTTTGCCTAGGTTCTTATCATGCATCAATCGATATAATTGAAAATGGGTCGTTCATCTGGTCAAATGAACTATGGAGAATAAGTAGCGTGAATTCCAGTTATACAATGTGCCAGAGTTATCCATTTGCTTTGATTGTTCCAAAGATCATTAGTGATGAAGAAGTGCTCCAGGCATCCAGCTTCCGTGCAAGATGTCGACTGCCTGTAGTTTCATGGTGCCATCCATTGACTGGAGCAGTTGTTGCACGATCTTCTCAACCCTTAGTTGGTATTATGATGAACATGAGGAGCAACATGGATGAAAAACTTGTGGCCGGACTCTGTAGCAAGCTAGATAATGGCTCAAGGAGAAAGTTATATATTGTTGATGCACGGCCAAGAAAAAATGCATTGGCTAATGGAGCCATGGGAGGTGGTTCAGAATCATCGTCAAACTATTTTCAATCTGAGGTAGTCTTCTTGGGGATAGACAACATCCATGCGATGAGAGACAGCTTTGTTCGGCTCCGAGAATACATGGACACTCATGGCAGAGCGTCATCAGATGGAATGTCCTCTTTCTTGAGACAAGGTGGGTCAACGTGGGGTGGTGGCAATCTAAGTAGTATGTCTGCTTCGGTATCAACCCTTGGGGACATTGGATGGTTACTGCATGTTCAGAATGTGTTGGCTGGAGCAGCTTGGATTGCTGCTCGTGTTGCAATTGAAAACTCTTCTGTTCTTGTGCATTGCAGTGATGGATGGGATAGAACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATACTATCGGACATTCACAGGGTTTCAGGCACTTGTTGAAAAAGACTGGCTTGCTTTTGGTCATCCATTTTCTGATCGGGTGGGAATGCCATCTGTCTCTGGAACTGGCAACATGCCTTTTGAGTTATCTAGGCAGCCTTCAACTGGAAATTTTGCACCATCACCCATACACCAGTCAACAGGAACATTTTCATCACAACCTCCAGCTTCATCTCACTCCCATAACTCCAACAACTATTCTCCTATTTTTTTGCAGTGGGTTGATTGTGTTTCACAATTATTGCGGATGTATCCTTTTGCTTTTCAATTCTCTGCGGCTTTCCTGGTGGACTTCATAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAGTGAGAAGGAGAGGCAGAAATGCAATGTTTTTGAGGCATGTGGATGTCTGTGGGTTTATTTAGCTGATTTACGGACATCAGAAGGAGGTTCGCATGTGCATTACAATCCCTTCTATGATCCACTCAAGCATAATGGTCCTCTTCTACCCCCAGCAGCAGCATTGGCGCCTACGTTATGGCCCCAATTCCACCTTCGTTGGGCATGCCCAGAAGAAGCACAAGCTGGGGAGATTGAAGCGCAATGCAGGAAGATAGTTATGAAATGCTCTGAGACGCAGAAGGCTAAAGAAATGGCAGAAAGAAAAGTTAAAGAAGTTACAAATTCCATGGAGTCACTGAATGCTGAATTACGACGTGAGAAGCAGATAAACAGCTCAGCTATGAACATGGCAAAGAGTGTGAGCAAAGAAAATATGGCTATAAAGCGTGCAATTCAGTCAATGGGGTGCAAGGTTCATGTCTCTGGTAGTGGTGAATGCACTGTTGACATTGAAAGCAACCCAGACATTCTGTGTTGTTCCTCAAGAAAAGAATCAAATAGTAATGTGCGTGATGACAAAACGGACCCACCTGTTTCAGTACTAGTCACAGCAGATGATGATGATGATGGAAACAATGGGATTGTTAGGGTATGTGAAACTCTATGCCCATTTGGCTCTGGAGGTGGAGGCTGCAGGTGGCCAAATGGTGGTTGTGCTCAATTAGGTAGCCAGTATGTTGGCCTCAAGGCAAACTTTGATGCATTTGACCAACTGTCAATTAATGATAGTTATTTCAAGTCTGAGTGA 2547 0.4386 MDVPKHRATRTTSLRDVSDFSKMEVTGSWDALEWTKIEPITPFVSNANFDFLIEAEQVVAEGHGVVLVNTDDAGTLMVTNFRLIFLSEGTRKVISLGTIPLATIEKFNKIVVKVQSNNRSVDKTPAQRLLQVIGKDMRILVFSFRPRTKQRRLVFDALLRCTKPTRLWDLYAFASGPSRFKNTTPLVRLLDEYCRLLCLGSYHASIDIIENGSFIWSNELWRISSVNSSYTMCQSYPFALIVPKIISDEEVLQASSFRARCRLPVVSWCHPLTGAVVARSSQPLVGIMMNMRSNMDEKLVAGLCSKLDNGSRRKLYIVDARPRKNALANGAMGGGSESSSNYFQSEVVFLGIDNIHAMRDSFVRLREYMDTHGRASSDGMSSFLRQGGSTWGGGNLSSMSASVSTLGDIGWLLHVQNVLAGAAWIAARVAIENSSVLVHCSDGWDRTSQLVSLANLLLDPYYRTFTGFQALVEKDWLAFGHPFSDRVGMPSVSGTGNMPFELSRQPSTGNFAPSPIHQSTGTFSSQPPASSHSHNSNNYSPIFLQWVDCVSQLLRMYPFAFQFSAAFLVDFIDCMLSCRFGNFLCNSEKERQKCNVFEACGCLWVYLADLRTSEGGSHVHYNPFYDPLKHNGPLLPPAAALAPTLWPQFHLRWACPEEAQAGEIEAQCRKIVMKCSETQKAKEMAERKVKEVTNSMESLNAELRREKQINSSAMNMAKSVSKENMAIKRAIQSMGCKVHVSGSGECTVDIESNPDILCCSSRKESNSNVRDDKTDPPVSVLVTADDDDDGNNGIVRVCETLCPFGSGGGGCRWPNGGCAQLGSQYVGLKANFDAFDQLSINDSYFKSE 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3519g00003 848 Coils Coil 675 709 - -
Vium3519g00003 848 SUPERFAMILY PH domain-like 53 174 - -
Vium3519g00003 848 PANTHER MYOTUBULARIN-RELATED 43 757 IPR030564 -
Vium3519g00003 848 CDD PTP-MTM-like 261 552 - -
Vium3519g00003 848 Gene3D - 63 162 IPR011993 -
Vium3519g00003 848 Pfam Myotubularin-like phosphatase domain 171 592 IPR010569 -
Vium3519g00003 848 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 213 654 IPR029021 -
Vium3519g00003 848 ProSitePatterns Tyrosine specific protein phosphatases active site. 438 448 IPR016130 GO:0016311|GO:0016791
Vium3519g00003 848 ProSiteProfiles Myotubularin phosphatase domain. 202 650 IPR010569 -
Vium3519g00003 848 SMART gram2001c 42 111 IPR004182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3519g00003 Vium-Chr3519 14738 37073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3519g00003 1 846 Protein tyrosine phosphatase (PTP) family AT3G10550 66.002 0.0 1124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3519g00003 K18081 - gmx:100781842 1526.53