Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3517g00005 ATGGTGGAAGATAGTAAAGCTGCAGTAGCAGTTGATGATGCCTGTTCAAGAGAAAACTTGTTGTTGCATGCACAGGAACTTGTTCCTGTGGCTCTTGCTAAGGCGAAAGAGGTTAAGGTGTTCCCTGGTAGGTGGAAGATGATCATTTCAAAATTGGAGCAGATTCCCTCCTGTTTATCGGATTTGTCTAGCCACCCTTGTTTCTCCAAGAATGCTCTATGCAAGGAGCAATTGCAGGCTGTGTCAAAGACGCTTAAAGAAACCAAAGAATTGGCTGAGTTGTGTGTGATGGAGAAGTACGAGGGTAAGCTTAGGATGCAGAGTGATCTTGATGCATTAACTGGGAAACTGGATTTGAATTTAAAGGATTGTGGTCTCTTGATCAAGACCGGTGTGCTCGGTGAAGCTACTTTGCCATTAACCGTGTTAGGTTCTATGGCAGAATCAGATATTGCAACACACAACTATATAAGAGAACTACTAGCGCGCCTTCAGATTGGTCACTTGGAAGCAAAGCACAAAGCCTTAGACAGACTCTATGATGTTATGAAAGAGGATGAAAAGAATGTTTTGGCTGTTCTTGGCAGGAGGAATGTTGCTGCTTTGGTTCAATTGCTCACAGCAACATCTCCAAGGATAAGGGAGAAGACGGTTACTGTTATATGCTCTCTGGTGGAATCTGGGAGCTGCGAAAAGTGGCTAGTTTCTGAAGGAGTTCTTCCACCTCTTATTAGACTTGTTGAATCTGGTAGTGCTGTCAGTAAAGAGAAGGCTATAGTATCTCTTCAGAGACTGTCAATGTCAGCAGAAACAACTCGTGCAATTGTTGGACACGGTGGTGTTCGGCCATTGATCGAGCTTTGTGAGAGTGGAGATTCTGTGTCACAGGCTGCTGCTGCCTGCACTTTGACAAACATATCAGCTGTTCCTGAGGTGAGACAGGCTTTGGCTGAAGAAGGTATTGTAAGTGTTATGATCAATCTTCTTAGTTGTGGAATTTTGTTAGGTTCCAAAGAGTATGCAGCTGAGTGCTTGCAGAATCTCACTTCAAGCAACGAGCATTTGAGAAAGTGTGTTATATCAGAAGGTGGTGTTAGAAGTCTTCTGACCTATCTAGATGGTCCACTTCCTCAAGAATCCGCAGTTGGAGCATTGAGGAATCTGGTTGGATCAGTTTCTGAGGAAACTTTGGTTTCTCTTGGTTTGCTTCCTTGTTTGGTTCACGTTCTGAAGTCTGGATCTTTGGGTGCTCAACAAGCTGCAGCTTCTGTCATTTGCCGAGTTTGCAGCTCAATGGAGATGAAGAAAATGGTGGGTGAAGCTGGGTGCATCCCTCTTCTTATAAAGATGCTTGAGGCTAAAACAAATACTGCTAGAGAGATTGCTGCTCAAGCAATTTCAAGCCTCATGGTTCTGTCTCAGAATCGGAGAGAGGTTAAGAAAGATGATAAAAGTGTTCCAAATCTTGTCCAGTTGCTTGATCCAAGCTCTCAGAACACTGCCAAAAAGTACGCAGTTTCATGCCTTGGATCACTTTCTCCATGTAAGAAGTGTAAGAAACTGATGATTTCGTATGGAGCAATCGGGTATCTGAAGAAGCTTACAGAGATGGACATTCCAGGAGCTAAAAAGCTTCTTGAGAGGTTGGAAAGAGGGAAATTGAGAAGCTTGTTCAGCAGAAAGTAG 1686 0.4359 MVEDSKAAVAVDDACSRENLLLHAQELVPVALAKAKEVKVFPGRWKMIISKLEQIPSCLSDLSSHPCFSKNALCKEQLQAVSKTLKETKELAELCVMEKYEGKLRMQSDLDALTGKLDLNLKDCGLLIKTGVLGEATLPLTVLGSMAESDIATHNYIRELLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAVLGRRNVAALVQLLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCESGDSVSQAAAACTLTNISAVPEVRQALAEEGIVSVMINLLSCGILLGSKEYAAECLQNLTSSNEHLRKCVISEGGVRSLLTYLDGPLPQESAVGALRNLVGSVSEETLVSLGLLPCLVHVLKSGSLGAQQAAASVICRVCSSMEMKKMVGEAGCIPLLIKMLEAKTNTAREIAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLDPSSQNTAKKYAVSCLGSLSPCKKCKKLMISYGAIGYLKKLTEMDIPGAKKLLERLERGKLRSLFSRK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3517g00005 561 SMART arm_5 352 390 IPR000225 GO:0005515
Vium3517g00005 561 SMART arm_5 391 430 IPR000225 GO:0005515
Vium3517g00005 561 SMART arm_5 309 350 IPR000225 GO:0005515
Vium3517g00005 561 SMART arm_5 186 226 IPR000225 GO:0005515
Vium3517g00005 561 SMART arm_5 472 514 IPR000225 GO:0005515
Vium3517g00005 561 SMART arm_5 268 308 IPR000225 GO:0005515
Vium3517g00005 561 SMART arm_5 431 471 IPR000225 GO:0005515
Vium3517g00005 561 Gene3D - 392 542 IPR011989 -
Vium3517g00005 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Vium3517g00005 561 Pfam Armadillo/beta-catenin-like repeat 270 308 IPR000225 GO:0005515
Vium3517g00005 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 15 559 - -
Vium3517g00005 561 Gene3D - 153 391 IPR011989 -
Vium3517g00005 561 SUPERFAMILY ARM repeat 156 538 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3517g00005 Vium-Chr3517 21437 24886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3517g00005 401 539 U-box Gene Family AT3G54790 28.777 3.35e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3517g00005 - - var:108346326 1055.43