Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3517g00003 ATGACTTTTGCTCAGTGTTCAATTTCCAACATGTTTCAACATAGAAACCATGATGATTTCGCAACTGTGGCAGGGTTTGCTTTCATTTACATGGAAGATGAACGAGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACTGAATTTGGTAGAAAGGGACGTCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGATTCCAGAAAACCTTCATCTAATTCAAGGCCATCCAAAACATTGTTTGTTATTAATTTTGATCCAGTTCACGCCAGGACAAAGGATCTGGAGAGACATTTTGACCCTTATGGGAAAATTTTAAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTATGAATCACAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACGGTGGAGTATGCCATAAGAGATGATGATGACAGAGATAGAAGGAACGGATACAGTCCTGAAAGAAGAGCTCATGACTCGCCTGATGGGAGATATGGTCGTGGTAGATCGCCCAGTCCATATCGTAGAGGTAGTGGTAGCCCAGATTATGGTCATGGATCAAATCCATCTTCCCGACCAGAAACAAAAGGAAGCCCCAAGTATGAACGAGCTGAAAGTCCGATAAATGGGAGATATGATAGCCGGTCTCCACCACCCCGAGAAAGGTCACGTTCTTGA 726 0.4339 MTFAQCSISNMFQHRNHDDFATVAGFAFIYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGDSRKPSSNSRPSKTLFVINFDPVHARTKDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPERRAHDSPDGRYGRGRSPSPYRRGSGSPDYGHGSNPSSRPETKGSPKYERAESPINGRYDSRSPPPRERSRS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3517g00003 241 MobiDBLite consensus disorder prediction 62 85 - -
Vium3517g00003 241 Gene3D - 77 207 IPR012677 -
Vium3517g00003 241 Gene3D - 10 76 IPR012677 -
Vium3517g00003 241 MobiDBLite consensus disorder prediction 159 181 - -
Vium3517g00003 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 156 IPR000504 GO:0003723
Vium3517g00003 241 MobiDBLite consensus disorder prediction 159 241 - -
Vium3517g00003 241 SUPERFAMILY RNA-binding domain, RBD 24 160 IPR035979 GO:0003676
Vium3517g00003 241 MobiDBLite consensus disorder prediction 212 241 - -
Vium3517g00003 241 FunFam serine/arginine-rich splicing factor RS41 isoform X2 77 208 - -
Vium3517g00003 241 SMART rrm1_1 86 152 IPR000504 GO:0003723
Vium3517g00003 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 52 IPR000504 GO:0003723
Vium3517g00003 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 149 IPR000504 GO:0003723
Vium3517g00003 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 63 IPR000504 GO:0003723
Vium3517g00003 241 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 22 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3517g00003 Vium-Chr3517 9434 12266 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3517g00003 25 177 Eukaryotic Initiation Factors Gene Family AT1G49760 25.767 1.96e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3517g00003 K12893 - gmx:100797778 349.747