Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3517g00001 ATGAGGCCTGTTTTCTGTGGGAACCTGGATTTCGACGCGCGTCAATCTGATGTGGAGAGGCTCTTCAGAAGATACGGGAAAGTCGATAGAGTCGACATGAAATCTGGGTTTGCTTTCATTTACATGGAAGATGAACGAGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACTGAATTTGGTAGAAAGGGACGTCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGATTCCAGAAAACCTTCATCTAATTCAAGGCCATCCAAAACATTGTTTGTTATTAATTTTGATCCAGTTCACGCCAGGACAAAGGATCTGGAGAGACATTTTGACCCTTATGGGAAAATTTTAAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTATGAATCACAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACGGTGGAGTATGCCATAAGAGATGATGATGACAGAGATAGAAGGAACGGATACAGTCCTGAAAGAAGAGCTCATGACTCGCCTGATGGGAGATATGGTCGTGGTAGATCGCCCAGTCCATATCGTAGAGGTAGTGGTAGCCCAGATTATGGTCATGGATCAAATCCATCTTCCCGACCAGAAACAAAAGGAAGCCCCAAGTATGAACGAGCTGAAAGTCCGATAAATGGGAGATATGATAGCCGGTCTCCACCACCCCGAGAAAGGTCACGTTCTTGA 759 0.4466 MRPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFIYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGDSRKPSSNSRPSKTLFVINFDPVHARTKDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPERRAHDSPDGRYGRGRSPSPYRRGSGSPDYGHGSNPSSRPETKGSPKYERAESPINGRYDSRSPPPRERSRS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3517g00001 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Vium3517g00001 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Vium3517g00001 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Vium3517g00001 252 MobiDBLite consensus disorder prediction 223 252 - -
Vium3517g00001 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Vium3517g00001 252 SUPERFAMILY RNA-binding domain, RBD 2 170 IPR035979 GO:0003676
Vium3517g00001 252 FunFam serine/arginine-rich splicing factor RS41 isoform X2 88 219 - -
Vium3517g00001 252 MobiDBLite consensus disorder prediction 170 192 - -
Vium3517g00001 252 SMART rrm1_1 3 70 IPR000504 GO:0003723
Vium3517g00001 252 SMART rrm1_1 97 163 IPR000504 GO:0003723
Vium3517g00001 252 MobiDBLite consensus disorder prediction 72 96 - -
Vium3517g00001 252 Gene3D - 87 216 IPR012677 -
Vium3517g00001 252 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Vium3517g00001 252 Gene3D - 1 86 IPR012677 -
Vium3517g00001 252 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 98 233 - -
Vium3517g00001 252 MobiDBLite consensus disorder prediction 72 86 - -
Vium3517g00001 252 MobiDBLite consensus disorder prediction 170 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3517g00001 Vium-Chr3517 9170 12266 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3517g00001 4 188 Eukaryotic Initiation Factors Gene Family AT1G49760 23.267 4.33e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3517g00001 K12893 - gmx:100797778 419.083