Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3514g00003 ATGTGGTTTTCTGGAATGATGCAAGCAACAACAAGGTGTAAGGAGCTTCTTTCCATGTGGGCTTTGGTTGCCAGTGGCAGTTATGCACTTCACCAATTCATGAAAGTTGTGGAGACACTTGTTTTTGCTGAATTTACTTGCATTTTGGCATTAGGAGGGTCTATAATGGGGATAATTGCAGGAGGCATCAGTGGGCAGACCACAGAAGCTGGTTTTGTTGATGGTGCTTGCAAAGGAGCTGTGACAGGGGCAATTGCTGCATTAGAATTGCTAAATAATGATGCAGATGCTGAAGCTCTGTCTAAGTTTGCTCTATTAAGGAGTTTGTTAAATGGAAAGCTATTTATGGAATGGATATGTCCAGTTGTTGCACAGGTCTATCAATGTCATATGATTGCACATGGAACAAGTTACAGAGAAGAATCATCAGATATAAACAATGTCATTGTGAGGGGAATCACAGTCATCCAAGAGCTTCCTGTTCAACAGTTCAATTCCAGTGAAATGTTCAATCTATACAATGAGTCATGCTGTTCAATTTGCTTCCAGGAATTTGAGGATGAAGAATTTGTGAGGACACTTCCAAACTGTAGCCACTTTTTTCACTTGGTCTGCATAGACAAATGGCTAGTTCAACAAGGATCATGCCCCATCTGTAGAATTTATGTTCCACATTTATGA 681 0.4038 MWFSGMMQATTRCKELLSMWALVASGSYALHQFMKVVETLVFAEFTCILALGGSIMGIIAGGISGQTTEAGFVDGACKGAVTGAIAALELLNNDADAEALSKFALLRSLLNGKLFMEWICPVVAQVYQCHMIAHGTSYREESSDINNVIVRGITVIQELPVQQFNSSEMFNLYNESCCSICFQEFEDEEFVRTLPNCSHFFHLVCIDKWLVQQGSCPICRIYVPHL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3514g00003 226 SMART ring_2 178 219 IPR001841 -
Vium3514g00003 226 SUPERFAMILY RING/U-box 171 224 - -
Vium3514g00003 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 224 IPR013083 -
Vium3514g00003 226 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 31 220 IPR044523 -
Vium3514g00003 226 ProSiteProfiles Zinc finger RING-type profile. 178 220 IPR001841 -
Vium3514g00003 226 Pfam Ring finger domain 178 220 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3514g00003 Vium-Chr3514 12069 13469 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3514g00003 36 223 C3H Transcription Factor Family AT5G66070 33.333 2.81e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3514g00003 - K19041 gmx:100799697 304.293