Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3508g00004 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCAGATCCTCATTCCTTTCAACCTGGAAGTGTTTATTCCGAGCCTTGGTGGCGCGGTATTGGTTACAATCCCTTGGCCCAAACAATGGCTGGGGCAAATGCATCCAATTCGTCATCTCTTGAGTGCCCTAATGGTGATTCTGAGTCCAATGAAGAAGGCCAGTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAAGAATTTCAGCCTGCTGTTCCTAACGAACCAGGAAATTATGGGCAAGAACAGCAAGGGACCCAGCATACTGCATCATCTGCACCATCCATGCGTGAAGAATGCCTTACTCAGACACCGCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCATATTATGGGGGCATGATGGCAGCTTATGGTCACCAGCAGTTGGGATATCCTCCTTTTATAGGAATGCCTCATGCCAGGATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAAGCCCGTGCTAAAGCAGAACTTGAAAGGAAGCTAATAAAATCTAGAAAGCCATATCTTCACGAGTCTCGGCACCAGCATGCTATGAGACGGGCGAGGGGTACCGGAGGACGATTTGCAAAGAAATCCGATGCTGAGGGTTCAAACAACTCAGGCAAGGAAAAGGATAATGGTGCTGACTCTGTCCTATCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCGGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCAGCAAAAGTACAGAACAGGTTCGAAGCACCTGGTTTCCAAAATGTCAGTGGCTCTTACAATAATCATCACGGTTTGCAATCTTCGGTGTATCATTCATCCTCAGGTGAAAGAGTGGAGGAAGGGGACCGTTCAGGTCAGAACTAA 1005 0.4657 MQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGYNPLAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKEFQPAVPNEPGNYGQEQQGTQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYPPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKSDAEGSNNSGKEKDNGADSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARAAKVQNRFEAPGFQNVSGSYNNHHGLQSSVYHSSSGERVEEGDRSGQN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3508g00004 334 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Vium3508g00004 334 MobiDBLite consensus disorder prediction 92 115 - -
Vium3508g00004 334 MobiDBLite consensus disorder prediction 1 20 - -
Vium3508g00004 334 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 287 IPR001289 GO:0003700|GO:0006355
Vium3508g00004 334 MobiDBLite consensus disorder prediction 296 321 - -
Vium3508g00004 334 MobiDBLite consensus disorder prediction 246 287 - -
Vium3508g00004 334 MobiDBLite consensus disorder prediction 44 74 - -
Vium3508g00004 334 MobiDBLite consensus disorder prediction 209 228 - -
Vium3508g00004 334 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Vium3508g00004 334 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Vium3508g00004 334 Gene3D - 174 236 - -
Vium3508g00004 334 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Vium3508g00004 334 MobiDBLite consensus disorder prediction 44 115 - -
Vium3508g00004 334 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Vium3508g00004 334 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
Vium3508g00004 334 MobiDBLite consensus disorder prediction 207 334 - -
Vium3508g00004 334 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3508g00004 Vium-Chr3508 25312 29292 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3508g00004 16 278 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.585 5.26e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vium3508g00004 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3508g00004 K08064 - gmx:100808378 627.861