Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3508g00002 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCAGATCCTCATTCCTTTCAACCTGGAAGTGTTTATTCCGAGCCTTGGTGGCGCGGTATTGGTTACAATCCCTTGGCCCAAACAATGGCTGGGGCAAATGCATCCAATTCGTCATCTCTTGAGTGCCCTAATGGTGATTCTGAGTCCAATGAAGAAGGCCAGTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAAGAATTTCAGCCTGCTGTTCCTAACGAACCAGGAAATTATGGGCAAGAACAGCAAGGGACCCAGCATACTGCATCATCTGCACCATCCATGCGTGAAGAATGCCTTACTCAGACACCGCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCATATTATGGGGGCATGATGGCAGCTTATGGTCACCAGCAGTTGGGATATCCTCCTTTTATAGGAATGCCTCATGCCAGGATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAAGCCCGTGCTAAAGCAGAACTTGAAAGGAAGCTAATAAAATCTAGAAAGCCATATCTTCACGAGTCTCGGCACCAGCATGCTATGAGACGGGCGAGGGGTACCGGAGGACGATTTGCAAAGAAATCCGATGCTGAGGGTTCAAACAACTCAGGCAAGGAAAAGGATAATGGTGCTGACTCTGTCCTATCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCGGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCAGCAAAAGTACAGAACAGGTTCGAAGCACCTGGTTTCCAAAATGTCAGTGGCTCTTACAATAATCATCACGGTTTGCAATCTTCGGTGTATCATTCATCCTCAGGTGAAAGAGTGGAGGAAGGGGACCGTTCAGTTTTATAG 1002 0.4641 MQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGYNPLAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKEFQPAVPNEPGNYGQEQQGTQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYPPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKSDAEGSNNSGKEKDNGADSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARAAKVQNRFEAPGFQNVSGSYNNHHGLQSSVYHSSSGERVEEGDRSVL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3508g00002 333 Gene3D - 174 236 - -
Vium3508g00002 333 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 287 IPR001289 GO:0003700|GO:0006355
Vium3508g00002 333 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Vium3508g00002 333 MobiDBLite consensus disorder prediction 1 20 - -
Vium3508g00002 333 MobiDBLite consensus disorder prediction 92 115 - -
Vium3508g00002 333 MobiDBLite consensus disorder prediction 296 321 - -
Vium3508g00002 333 MobiDBLite consensus disorder prediction 246 287 - -
Vium3508g00002 333 MobiDBLite consensus disorder prediction 209 228 - -
Vium3508g00002 333 MobiDBLite consensus disorder prediction 44 74 - -
Vium3508g00002 333 MobiDBLite consensus disorder prediction 207 333 - -
Vium3508g00002 333 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Vium3508g00002 333 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Vium3508g00002 333 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Vium3508g00002 333 MobiDBLite consensus disorder prediction 44 115 - -
Vium3508g00002 333 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Vium3508g00002 333 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
Vium3508g00002 333 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3508g00002 Vium-Chr3508 25311 29850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3508g00002 16 278 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.585 4.47e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vium3508g00002 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3508g00002 K08064 - gmx:100808378 623.624