Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3506g00012 ATGATAGATTTCGCAGCAGAACACAATGTTAGAGCAGAAATTGAGGTAATTCCAATGGATTATGTTAACACAGCAATGGAGCGTCTACTCAAAGCTGACGTTAAATATCGATTTGTGATTGACGTTGGCAACACGGTGTCTAAAATTTTCTTTTGGAATAACAGAAAAACAGGAGAAAAGGATGTGACATTCAAGGTGTTGTACTGTGGAATATGTCATTCCGACCTTCACAAGTTGAAGAATGACTGGAGTGATTCAATTTATCCACTTGTTCCTGGGCGTGAGATTGTTGGAGAAGTAACGGAAGTGGGAAGCAAAGTAGAAAAGTTTAAGATTGGAGACAAGGTGGCAGTGGGATGTTTGGTTGGGTCTTGTTCCTCATGCGAAAATTGTGTCAACAATCTTGAGAATTACTGCCAACAAGCGATTCCCTCATATGGTGCCAAGTATGTGGATGGTAGCATCACATATGGGGGTTTCTCTGACTTCATGGTTGCAGACGAACACTTTGTTGTCAACATTCCAAATGGCCTACCTCTTGATGTTGCTGCACCTCTCCTTTGCGCAGGGATCACAGTGTATGGACCTTTGAGATATTTTGGCCTTGACAAACCTGGTATGCATGTAGGAGTGGTTGGCCTTGGTGGATTGGGCCATCTGGCTGTGAAGTTTGCCAAAGCCCTTGGCTTGAAAGTCACTGTCATTAGTACCTCTCCTAGTAAGGAACAAGAAGCCATTCAACATCTTGGAGCAGATTACTTTGTGCTTAGTAGAGACCAGGATCAAATGAAGGCTGCAAAATGCACCTTGGATGGTATAATTGATACTGTTTATGCGGTTCATCCTATCATGTCCTTGATTGATCTGTTAAAGTCTCATGGAAAGCTAGTGACGGTTGGAGCACCAGAGAAGCCTCTCGAGTTGCTACTTCCGTCTTTAATTTTGGGGAGAAAAAGTATAGCGGGAAGTTACATTGGAGGAATAAAGGAGACACAAGAAATGATAGATTTCGCAGCAGAACACAATGTTAGAGCAGAAATTGAGGTAATTCCAATGGATTATGTTAACACAGCAATGGAGCGTCTACTCAAAGCTGACGTTAAATATCGATTTGTGATTGACGTTGGCAACACGTTGAAGCCCTACCCTTCTACCACTTTGGACTGA 1167 0.425 MIDFAAEHNVRAEIEVIPMDYVNTAMERLLKADVKYRFVIDVGNTVSKIFFWNNRKTGEKDVTFKVLYCGICHSDLHKLKNDWSDSIYPLVPGREIVGEVTEVGSKVEKFKIGDKVAVGCLVGSCSSCENCVNNLENYCQQAIPSYGAKYVDGSITYGGFSDFMVADEHFVVNIPNGLPLDVAAPLLCAGITVYGPLRYFGLDKPGMHVGVVGLGGLGHLAVKFAKALGLKVTVISTSPSKEQEAIQHLGADYFVLSRDQDQMKAAKCTLDGIIDTVYAVHPIMSLIDLLKSHGKLVTVGAPEKPLELLLPSLILGRKSIAGSYIGGIKETQEMIDFAAEHNVRAEIEVIPMDYVNTAMERLLKADVKYRFVIDVGNTLKPYPSTTLD 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3506g00012 388 SMART PKS_ER_names_mod 44 373 IPR020843 GO:0016491
Vium3506g00012 388 CDD CAD1 55 374 IPR047109 GO:0016616
Vium3506g00012 388 PANTHER ALDEHYDE REDUCTASE 1 45 IPR047109 GO:0016616
Vium3506g00012 388 Pfam Zinc-binding dehydrogenase 216 339 IPR013149 -
Vium3506g00012 388 Pfam Alcohol dehydrogenase GroES-like domain 60 173 IPR013154 -
Vium3506g00012 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 178 343 IPR036291 -
Vium3506g00012 388 FunFam Putative cinnamyl alcohol dehydrogenase 6 346 375 - -
Vium3506g00012 388 Gene3D - 189 345 - -
Vium3506g00012 388 FunFam Cinnamyl alcohol dehydrogenase 189 345 - -
Vium3506g00012 388 FunFam Putative cinnamyl alcohol dehydrogenase 6 13 42 - -
Vium3506g00012 388 Gene3D - 52 375 - -
Vium3506g00012 388 Gene3D - 1 46 - -
Vium3506g00012 388 SUPERFAMILY GroES-like 54 206 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3506g00012 Vium-Chr3506 71292 75452 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3506g00012 1 46 Monolignol Biosynthesis Gene Families AT4G37990 71.739 1.69e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3506g00012 K23232 - gmx:100812491 598.586