Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3505g00009 ATGGCACTTTCTTCTTCTTCTTCTTCTTCAACCACTTTTGCTATAGCTTTGTTCACGCTTTTTCTTATTGGAAGTTGTTCAGCTCAACTCTCTGAGAACTTCTACGCAAAAACATGTCCCAAGCTTTCATCTGCTGTAAAATCTGTGGTTCTATCTGCTGTGGCTAAAGAACCTCGCATGGGAGCTTCTCTCCTTCGCCTCTTCTTTCATGACTGCTTTGTCAATGGTTGTGATGCATCAGTACTACTTGATGGGCCTTCCTCAGAGAAGACTGCACCACCCAACGCTAATTCTTTGAGAGGCTATGAAGTCATTGACGACATCAAGTCAAAGGTGGAGGCAATTTGCCCCGGAATAGTCTCGTGTGCTGATATAACAGCCATTGCTGCTCGTGATTCTGTCACTATTCTTGGAGGGCCATTTTGGAAGGTTAAACTTGGTAGAAGGGATTCCAAGACTGGATTCCTCCAACTTGCAAGCAGTGGTGTTCTCCCATCTCCATCTTCTTCCCTCAGCACCCTTATCTCAAACTTCAAAGATCAAGGCCTCTCTGCCACGGACATGGTAGCCTTATCTGGAGCACACACAATTGGGAAGGCAAGGTGTGCAATTTATGGAAGTCGCATATACAATGAAAAAAACATTGACAGTTTGTTTGCGAAGGCAAGGCAAAAGAACTGTCCGAGAGACAGCAGTGGGACACCAAAGGACAACAATGTAGCACCACTAGATTTCAAAAATCCTAACCATTTTGACAACAGCTACTACAAGAATCTCATCAACAAAAAGGGTCTTCTTCATTCTGATCAAGTTCTCTTCGATGGAGGATCCACAGATTCACTTGTTAGAGATTACAGCAACAATCAGAGGGCATTCGAGTCTGATTTTGTCACTGCAATGATCAAGATGGGAAACATCAAACCTTTAACCGGCTCAAATGGGGAGATAAGGAGGCATTGCAGTAGACCTAATTAG 975 0.4379 MALSSSSSSSTTFAIALFTLFLIGSCSAQLSENFYAKTCPKLSSAVKSVVLSAVAKEPRMGASLLRLFFHDCFVNGCDASVLLDGPSSEKTAPPNANSLRGYEVIDDIKSKVEAICPGIVSCADITAIAARDSVTILGGPFWKVKLGRRDSKTGFLQLASSGVLPSPSSSLSTLISNFKDQGLSATDMVALSGAHTIGKARCAIYGSRIYNEKNIDSLFAKARQKNCPRDSSGTPKDNNVAPLDFKNPNHFDNSYYKNLINKKGLLHSDQVLFDGGSTDSLVRDYSNNQRAFESDFVTAMIKMGNIKPLTGSNGEIRRHCSRPN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3505g00009 324 SUPERFAMILY Heme-dependent peroxidases 29 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 Gene3D - 33 321 - -
Vium3505g00009 324 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 PANTHER PEROXIDASE 72-RELATED 25 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 Pfam Peroxidase 47 288 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 CDD secretory_peroxidase 29 322 IPR033905 GO:0004601|GO:0042744
Vium3505g00009 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Vium3505g00009 324 ProSitePatterns Peroxidases active site signature. 61 72 IPR019794 GO:0004601
Vium3505g00009 324 ProSiteProfiles Plant heme peroxidase family profile. 29 324 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium3505g00009 324 FunFam Peroxidase 165 303 - -
Vium3505g00009 324 Gene3D Peroxidase, domain 2 165 303 - -
Vium3505g00009 324 FunFam Peroxidase 33 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3505g00009 Vium-Chr3505 42355 45632 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3505g00009 1 324 Peroxidase AT5G58400 59.021 6.37e-135 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3505g00009 K00430 - gmx:100812478 510.76