Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3505g00008 ATGGAGATATCTTTATTGAAGGTCATATCTGATGCAATATCCTCATTTTTGCATTTATCATTTTCTGAAAAGATGAAGTTAGTACCTGTATCAAAATGTTACCAAAAGGCAGAGAAGATGCTTAAGCTGTTGAAGCCTATTGTTGATACTAATGTTTTTTCAGATATAGCTTCTAATGAAGTACATAGGAAACTATTTGAGGAACTTGGTCTGGCAGTTGATGAGTTGACAGAGCTTATTCTGAACTGGCATCCGTTATCTAGCAAATTTTACTTTGTTAATCAAGTTGATGCCATAATATCAACAATTCAGGCATTGGGTCTAAGCATTTTACAACAGCTGGAGGTTTCACAGCAAGTTCTCCCTGATAATTTGGGAAATGAAATATCATCAGCCATTAAAAAAGCTATTATGGAACAACAGGAAGGTTTAGTATCAAGTTTAGAGGTCCTGGAAAACATTGCTGACAACCTGGGTCTAAGGTCTAATCAAGAGGTCCTGATTGAGGCTGTAGCCCTTGACAAGCTGAAGGAGAAGGCTGAACAAATTGAAAACACTTCAGAAGTTGAATATGTTGATAAAATGATCTCAATTGTAAATCGAATGCATGAGCATATTGTTATGCTTAAGCAAGCTCAGAGTTCTATCCCAGTGTCAGTACCTGCTGATTTTTGCTGTCCTCTGTCTTTGGAATTGATGACGGATCCGGTCATTGTGGCATCTGGTCAAACATATGAGCGGGCTTTCATCAAGAACTGGATTGACGTAGGTCTTACTGTCTGTCCAAAGACACGCCAGACTCTTGTCCACACCAATCTAATACCTAACTACACTGTAAAAGCATTAATTGCTAACTGGTGTGAAACACATGATGTAAAGCTTCCTGATCCCATTAAGTCCAAAAGCTTAAATCAACCATCTCCCTTTCATGTGTCTATGGAGTCTGGTTTGACCAAGGATTTGCCTGGTATAACTAGTGGTGAACCCCACCAAGAACAAACATCAACATTGCATCCCTCTTCTATTCCAGGTGGTTCTTTGAATGGCACGGTTCATGAGCCATATGTGGATCTTGAAAGAATATCACACACAGGTTCAGATGATGGATCTGCCAGCTCAAATGAAGGGAGTGTCGATTCATTTGGTGAATCATTAACATCACCATCCAGAAATGCCTTGAGCTCAGAACAATCTCGTAATGATGTTAGAACTACTTCTGATGTCAACAATACTCTGCTGTCAACCAGTTCAGTCCACAATCGCGATGCTTCTTCTGGGGAATTGAATTCAGGGCAAGATGCTGTTCGCTTGCCAACTCGGCATAGAGAATCTGAGTTTTCTTCCCAATTAGCAGTGCCAAGGTCTCAAAGCCAAACTATATGGCAACGATCATCTGAGTGGCTTGTTCCTAGGGTAGTGTCTACTATTGAAACAAGAGCTGATCTTTCTGCTGCTGAAACCCAGGTTCTGAAATTAGTGGAGCAGTTAAAGATTGATTCTCTTGATGCTAAGAGAGAGGCAACATCAGAACTTCGCCTTCTTGCTAAGCACAATATGGATAACCGAATTGTGATTTCAAATTGTGGAGCCATTAGCTTATTAGTTGATTTACTGCAATCAACTGATTCTATGATCCAGGAAAATTCTGTTACAGCTCTCCTTAACTTATCAATCAATGATAACAACAAGGCTGCTATTGCAAATGCTGGTGCAATTGAACCTTTGATTCATGTCCTCAAGACAGGGAGTGCAGAAGCCAAGGAAAATTCAGCTGCCACTCTTTTCAGCCTCTCAGTAACTGAGGAAAACAAAATCAGGATAGGGAGGTCTGGGGCTATTGGACCACTTGTTGATTTGTTGGGAAACGGAACCCCAAGGGGGAAGAAAGATGCTGCCACTGCCTTGTTTAATTTGTCCATATTTCACGAAAACAAGGACCGGATTGTGCAAGCAGGTGCTGTGAAACACCTTGTAGAGTTAATGGACCCAGCAGCTGGAATGGTGGACAAGGCTGTGGCTGTTTTAGCAAATCTTGCTACAATACCAGAAGGGAAAGCAGCCATTGGTGATCAAGGTGGGATTCCTGTTTTGGTTGAGGTTATTGAGTTGGGCTCTGTGAGAGGAAAGGAGAATGCTGCAGCGGCTCTTCTACATCTATGCTCAGACAACCACAGATATTTAAACAGTGTGCTCCAAGAAGGAGCTGTGCCACCTTTAGTAGCATTATCACAATCAGGCACCCCAAGGGCCAAAGAAAAGGCCCTTGCGCTCCTTAATCAATTTAGAAGCCAAAGACATGGTAGTGGTGGGAGAGGTTGA 2319 0.4174 MEISLLKVISDAISSFLHLSFSEKMKLVPVSKCYQKAEKMLKLLKPIVDTNVFSDIASNEVHRKLFEELGLAVDELTELILNWHPLSSKFYFVNQVDAIISTIQALGLSILQQLEVSQQVLPDNLGNEISSAIKKAIMEQQEGLVSSLEVLENIADNLGLRSNQEVLIEAVALDKLKEKAEQIENTSEVEYVDKMISIVNRMHEHIVMLKQAQSSIPVSVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDVGLTVCPKTRQTLVHTNLIPNYTVKALIANWCETHDVKLPDPIKSKSLNQPSPFHVSMESGLTKDLPGITSGEPHQEQTSTLHPSSIPGGSLNGTVHEPYVDLERISHTGSDDGSASSNEGSVDSFGESLTSPSRNALSSEQSRNDVRTTSDVNNTLLSTSSVHNRDASSGELNSGQDAVRLPTRHRESEFSSQLAVPRSQSQTIWQRSSEWLVPRVVSTIETRADLSAAETQVLKLVEQLKIDSLDAKREATSELRLLAKHNMDNRIVISNCGAISLLVDLLQSTDSMIQENSVTALLNLSINDNNKAAIANAGAIEPLIHVLKTGSAEAKENSAATLFSLSVTEENKIRIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGKAAIGDQGGIPVLVEVIELGSVRGKENAAAALLHLCSDNHRYLNSVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGSGGRG 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3505g00008 772 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 611 653 IPR000225 GO:0005515
Vium3505g00008 772 FunFam RING-type E3 ubiquitin transferase 473 767 - -
Vium3505g00008 772 Gene3D - 560 669 IPR011989 -
Vium3505g00008 772 Gene3D - 670 765 IPR011989 -
Vium3505g00008 772 MobiDBLite consensus disorder prediction 365 432 - -
Vium3505g00008 772 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Vium3505g00008 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 296 IPR013083 -
Vium3505g00008 772 SUPERFAMILY ARM repeat 489 761 IPR016024 -
Vium3505g00008 772 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Vium3505g00008 772 CDD RING-Ubox_PUB 221 273 IPR045210 -
Vium3505g00008 772 SUPERFAMILY RING/U-box 208 297 - -
Vium3505g00008 772 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 570 612 IPR000225 GO:0005515
Vium3505g00008 772 MobiDBLite consensus disorder prediction 327 347 - -
Vium3505g00008 772 MobiDBLite consensus disorder prediction 297 434 - -
Vium3505g00008 772 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 652 693 IPR000225 GO:0005515
Vium3505g00008 772 Pfam Armadillo/beta-catenin-like repeat 559 598 IPR000225 GO:0005515
Vium3505g00008 772 Pfam Armadillo/beta-catenin-like repeat 601 639 IPR000225 GO:0005515
Vium3505g00008 772 Pfam Armadillo/beta-catenin-like repeat 520 557 IPR000225 GO:0005515
Vium3505g00008 772 Pfam Armadillo/beta-catenin-like repeat 682 721 IPR000225 GO:0005515
Vium3505g00008 772 Pfam Armadillo/beta-catenin-like repeat 643 679 IPR000225 GO:0005515
Vium3505g00008 772 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 529 571 IPR000225 GO:0005515
Vium3505g00008 772 Gene3D - 448 559 IPR011989 -
Vium3505g00008 772 PANTHER U BOX DOMAIN-CONTAINING 31 760 - -
Vium3505g00008 772 SMART arm_5 518 558 IPR000225 GO:0005515
Vium3505g00008 772 SMART arm_5 681 721 IPR000225 GO:0005515
Vium3505g00008 772 SMART arm_5 722 763 IPR000225 GO:0005515
Vium3505g00008 772 SMART arm_5 641 680 IPR000225 GO:0005515
Vium3505g00008 772 SMART arm_5 559 599 IPR000225 GO:0005515
Vium3505g00008 772 SMART arm_5 600 640 IPR000225 GO:0005515
Vium3505g00008 772 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Vium3505g00008 772 FunFam RING-type E3 ubiquitin transferase 219 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3505g00008 Vium-Chr3505 34677 40106 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3505g00008 180 772 U-box Gene Family AT2G23140 59.875 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3505g00008 - - gmx:100777715 1217.22