Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium3505g00008 | ATGGAGATATCTTTATTGAAGGTCATATCTGATGCAATATCCTCATTTTTGCATTTATCATTTTCTGAAAAGATGAAGTTAGTACCTGTATCAAAATGTTACCAAAAGGCAGAGAAGATGCTTAAGCTGTTGAAGCCTATTGTTGATACTAATGTTTTTTCAGATATAGCTTCTAATGAAGTACATAGGAAACTATTTGAGGAACTTGGTCTGGCAGTTGATGAGTTGACAGAGCTTATTCTGAACTGGCATCCGTTATCTAGCAAATTTTACTTTGTTAATCAAGTTGATGCCATAATATCAACAATTCAGGCATTGGGTCTAAGCATTTTACAACAGCTGGAGGTTTCACAGCAAGTTCTCCCTGATAATTTGGGAAATGAAATATCATCAGCCATTAAAAAAGCTATTATGGAACAACAGGAAGGTTTAGTATCAAGTTTAGAGGTCCTGGAAAACATTGCTGACAACCTGGGTCTAAGGTCTAATCAAGAGGTCCTGATTGAGGCTGTAGCCCTTGACAAGCTGAAGGAGAAGGCTGAACAAATTGAAAACACTTCAGAAGTTGAATATGTTGATAAAATGATCTCAATTGTAAATCGAATGCATGAGCATATTGTTATGCTTAAGCAAGCTCAGAGTTCTATCCCAGTGTCAGTACCTGCTGATTTTTGCTGTCCTCTGTCTTTGGAATTGATGACGGATCCGGTCATTGTGGCATCTGGTCAAACATATGAGCGGGCTTTCATCAAGAACTGGATTGACGTAGGTCTTACTGTCTGTCCAAAGACACGCCAGACTCTTGTCCACACCAATCTAATACCTAACTACACTGTAAAAGCATTAATTGCTAACTGGTGTGAAACACATGATGTAAAGCTTCCTGATCCCATTAAGTCCAAAAGCTTAAATCAACCATCTCCCTTTCATGTGTCTATGGAGTCTGGTTTGACCAAGGATTTGCCTGGTATAACTAGTGGTGAACCCCACCAAGAACAAACATCAACATTGCATCCCTCTTCTATTCCAGGTGGTTCTTTGAATGGCACGGTTCATGAGCCATATGTGGATCTTGAAAGAATATCACACACAGGTTCAGATGATGGATCTGCCAGCTCAAATGAAGGGAGTGTCGATTCATTTGGTGAATCATTAACATCACCATCCAGAAATGCCTTGAGCTCAGAACAATCTCGTAATGATGTTAGAACTACTTCTGATGTCAACAATACTCTGCTGTCAACCAGTTCAGTCCACAATCGCGATGCTTCTTCTGGGGAATTGAATTCAGGGCAAGATGCTGTTCGCTTGCCAACTCGGCATAGAGAATCTGAGTTTTCTTCCCAATTAGCAGTGCCAAGGTCTCAAAGCCAAACTATATGGCAACGATCATCTGAGTGGCTTGTTCCTAGGGTAGTGTCTACTATTGAAACAAGAGCTGATCTTTCTGCTGCTGAAACCCAGGTTCTGAAATTAGTGGAGCAGTTAAAGATTGATTCTCTTGATGCTAAGAGAGAGGCAACATCAGAACTTCGCCTTCTTGCTAAGCACAATATGGATAACCGAATTGTGATTTCAAATTGTGGAGCCATTAGCTTATTAGTTGATTTACTGCAATCAACTGATTCTATGATCCAGGAAAATTCTGTTACAGCTCTCCTTAACTTATCAATCAATGATAACAACAAGGCTGCTATTGCAAATGCTGGTGCAATTGAACCTTTGATTCATGTCCTCAAGACAGGGAGTGCAGAAGCCAAGGAAAATTCAGCTGCCACTCTTTTCAGCCTCTCAGTAACTGAGGAAAACAAAATCAGGATAGGGAGGTCTGGGGCTATTGGACCACTTGTTGATTTGTTGGGAAACGGAACCCCAAGGGGGAAGAAAGATGCTGCCACTGCCTTGTTTAATTTGTCCATATTTCACGAAAACAAGGACCGGATTGTGCAAGCAGGTGCTGTGAAACACCTTGTAGAGTTAATGGACCCAGCAGCTGGAATGGTGGACAAGGCTGTGGCTGTTTTAGCAAATCTTGCTACAATACCAGAAGGGAAAGCAGCCATTGGTGATCAAGGTGGGATTCCTGTTTTGGTTGAGGTTATTGAGTTGGGCTCTGTGAGAGGAAAGGAGAATGCTGCAGCGGCTCTTCTACATCTATGCTCAGACAACCACAGATATTTAAACAGTGTGCTCCAAGAAGGAGCTGTGCCACCTTTAGTAGCATTATCACAATCAGGCACCCCAAGGGCCAAAGAAAAGGCCCTTGCGCTCCTTAATCAATTTAGAAGCCAAAGACATGGTAGTGGTGGGAGAGGTTGA | 2319 | 0.4174 | MEISLLKVISDAISSFLHLSFSEKMKLVPVSKCYQKAEKMLKLLKPIVDTNVFSDIASNEVHRKLFEELGLAVDELTELILNWHPLSSKFYFVNQVDAIISTIQALGLSILQQLEVSQQVLPDNLGNEISSAIKKAIMEQQEGLVSSLEVLENIADNLGLRSNQEVLIEAVALDKLKEKAEQIENTSEVEYVDKMISIVNRMHEHIVMLKQAQSSIPVSVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDVGLTVCPKTRQTLVHTNLIPNYTVKALIANWCETHDVKLPDPIKSKSLNQPSPFHVSMESGLTKDLPGITSGEPHQEQTSTLHPSSIPGGSLNGTVHEPYVDLERISHTGSDDGSASSNEGSVDSFGESLTSPSRNALSSEQSRNDVRTTSDVNNTLLSTSSVHNRDASSGELNSGQDAVRLPTRHRESEFSSQLAVPRSQSQTIWQRSSEWLVPRVVSTIETRADLSAAETQVLKLVEQLKIDSLDAKREATSELRLLAKHNMDNRIVISNCGAISLLVDLLQSTDSMIQENSVTALLNLSINDNNKAAIANAGAIEPLIHVLKTGSAEAKENSAATLFSLSVTEENKIRIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGKAAIGDQGGIPVLVEVIELGSVRGKENAAAALLHLCSDNHRYLNSVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGSGGRG | 772 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium3505g00008 | 772 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 611 | 653 | IPR000225 | GO:0005515 | |
Vium3505g00008 | 772 | FunFam | RING-type E3 ubiquitin transferase | 473 | 767 | - | - | |
Vium3505g00008 | 772 | Gene3D | - | 560 | 669 | IPR011989 | - | |
Vium3505g00008 | 772 | Gene3D | - | 670 | 765 | IPR011989 | - | |
Vium3505g00008 | 772 | MobiDBLite | consensus disorder prediction | 365 | 432 | - | - | |
Vium3505g00008 | 772 | Pfam | U-box domain | 220 | 290 | IPR003613 | GO:0004842|GO:0016567 | |
Vium3505g00008 | 772 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 200 | 296 | IPR013083 | - | |
Vium3505g00008 | 772 | SUPERFAMILY | ARM repeat | 489 | 761 | IPR016024 | - | |
Vium3505g00008 | 772 | ProSiteProfiles | U-box domain profile. | 219 | 293 | IPR003613 | GO:0004842|GO:0016567 | |
Vium3505g00008 | 772 | CDD | RING-Ubox_PUB | 221 | 273 | IPR045210 | - | |
Vium3505g00008 | 772 | SUPERFAMILY | RING/U-box | 208 | 297 | - | - | |
Vium3505g00008 | 772 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 570 | 612 | IPR000225 | GO:0005515 | |
Vium3505g00008 | 772 | MobiDBLite | consensus disorder prediction | 327 | 347 | - | - | |
Vium3505g00008 | 772 | MobiDBLite | consensus disorder prediction | 297 | 434 | - | - | |
Vium3505g00008 | 772 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 652 | 693 | IPR000225 | GO:0005515 | |
Vium3505g00008 | 772 | Pfam | Armadillo/beta-catenin-like repeat | 559 | 598 | IPR000225 | GO:0005515 | |
Vium3505g00008 | 772 | Pfam | Armadillo/beta-catenin-like repeat | 601 | 639 | IPR000225 | GO:0005515 | |
Vium3505g00008 | 772 | Pfam | Armadillo/beta-catenin-like repeat | 520 | 557 | IPR000225 | GO:0005515 | |
Vium3505g00008 | 772 | Pfam | Armadillo/beta-catenin-like repeat | 682 | 721 | IPR000225 | GO:0005515 | |
Vium3505g00008 | 772 | Pfam | Armadillo/beta-catenin-like repeat | 643 | 679 | IPR000225 | GO:0005515 | |
Vium3505g00008 | 772 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 529 | 571 | IPR000225 | GO:0005515 | |
Vium3505g00008 | 772 | Gene3D | - | 448 | 559 | IPR011989 | - | |
Vium3505g00008 | 772 | PANTHER | U BOX DOMAIN-CONTAINING | 31 | 760 | - | - | |
Vium3505g00008 | 772 | SMART | arm_5 | 518 | 558 | IPR000225 | GO:0005515 | |
Vium3505g00008 | 772 | SMART | arm_5 | 681 | 721 | IPR000225 | GO:0005515 | |
Vium3505g00008 | 772 | SMART | arm_5 | 722 | 763 | IPR000225 | GO:0005515 | |
Vium3505g00008 | 772 | SMART | arm_5 | 641 | 680 | IPR000225 | GO:0005515 | |
Vium3505g00008 | 772 | SMART | arm_5 | 559 | 599 | IPR000225 | GO:0005515 | |
Vium3505g00008 | 772 | SMART | arm_5 | 600 | 640 | IPR000225 | GO:0005515 | |
Vium3505g00008 | 772 | SMART | Ubox_2 | 223 | 286 | IPR003613 | GO:0004842|GO:0016567 | |
Vium3505g00008 | 772 | FunFam | RING-type E3 ubiquitin transferase | 219 | 294 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium3505g00008 | Vium-Chr3505 | 34677 | 40106 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium3505g00008 | 180 | 772 | U-box Gene Family | AT2G23140 | 59.875 | 0.0 | 691 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium3505g00008 | - | - | gmx:100777715 | 1217.22 |