Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3505g00003 ATGGGAAGGAAGCATTTCTATGGTCCAACTCCTGGGATAACCTTAAACACAGTAACCCCTTGTGCTGCATGCAAGCTTTTGAGAAGAAGGTGTGCTGAAGAATGCCCTTTCTCTCCTTATTTTTCACCACACGAGCCTCAAAAGTTTGTAGCCGTTCACAAAGTGTTTGGTGCAAGCAATGTCTCCAAGATGCTTCTGGAGGTACCAGAGGGCCAAAGAGCTGATGCAGCAAATAGCCTTGTTTACGAAGCTAACTTGAGGCTGAGAGATCCTGTATATGGATGCATGGGTGCAATATCAACTTTGCAGCAACAAGTTCAATCCTTACAAGCAGAACTGAATGCAATAAGGGCAGAGATACTAAAATACAAATATAGAGAGGCTGCAAGTCTCATTTCTTCTAATCATGCAGCTTTGGTTTCTTCAGCTGATGCAATCTCAGCAGCAATTCCCACAAACTCACAACCACAAGGTCTTTCTCAACCTCTTACTCCTCCTCCTCCACCAAAACCATTGCATACTCATCCACTAAAACCATTGCATTCTCCTTCTGTTATCCTTTCATCCTTCTCTTCATCTTCAACTTCTTCTGTGTACACTCCTCCTAAAAGCTCAATGAGCCTTGGATCCATTTCCAGCACTGAAAATGTCCCATACTTTGTTTAG 666 0.4309 MGRKHFYGPTPGITLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFVAVHKVFGASNVSKMLLEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISTLQQQVQSLQAELNAIRAEILKYKYREAASLISSNHAALVSSADAISAAIPTNSQPQGLSQPLTPPPPPKPLHTHPLKPLHSPSVILSSFSSSSTSSVYTPPKSSMSLGSISSTENVPYFV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3505g00003 221 ProSiteProfiles LOB domain profile. 19 120 IPR004883 -
Vium3505g00003 221 MobiDBLite consensus disorder prediction 152 178 - -
Vium3505g00003 221 MobiDBLite consensus disorder prediction 197 221 - -
Vium3505g00003 221 MobiDBLite consensus disorder prediction 160 176 - -
Vium3505g00003 221 Pfam Lateral organ boundaries (LOB) domain 20 116 IPR004883 -
Vium3505g00003 221 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 167 - -
Vium3505g00003 221 Coils Coil 99 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3505g00003 Vium-Chr3505 4189 5640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3505g00003 1 133 AS2 family AT2G30340 78.358 5.25e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium3505g00003 LOB 2.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3505g00003 - - gmx:100813489 326.25