Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3505g00002 ATGTTTGGACATCAGGATATAGATAGATTAGAGGAGATAACAAAGGTGAGAGCAGAGGTGGAGGCTTCTTCTCAAATGGGAAGGAAGCATTTCTATGGTCCAACTCCTGGGATAACCTTAAACACAGTAACCCCTTGTGCTGCATGCAAGCTTTTGAGAAGAAGGTGTGCTGAAGAATGCCCTTTCTCTCCTTATTTTTCACCACACGAGCCTCAAAAGTTTGTAGCCGTTCACAAAGTGTTTGGTGCAAGCAATGTCTCCAAGATGCTTCTGGAGGTACCAGAGGGCCAAAGAGCTGATGCAGCAAATAGCCTTGTTTACGAAGCTAACTTGAGGCTGAGAGATCCTGTATATGGATGCATGGGTGCAATATCAACTTTGCAGCAACAAGTTCAATCCTTACAAGCAGAACTGAATGCAATAAGGGCAGAGATACTAAAATACAAATATAGAGAGGCTGCAAGTCTCATTTCTTCTAATCATGCAGCTTTGGTTTCTTCAGCTGATGCAATCTCAGCAGCAATTCCCACAAACTCACAACCACAAGGTCTTTCTCAACCTCTTACTCCTCCTCCTCCACCAAAACCATTGCATACTCATCCACTAAAACCATTGCATTCTCCTTCTGTTATCCTTTCATCCTTCTCTTCATCTTCAACTTCTTCTGTGTACACTCCTCCTAAAAGCTCAATGAGCCTTGGATCCATTTCCAGCACTGAAAATGTCCCATACTTTGTTTAG 741 0.4291 MFGHQDIDRLEEITKVRAEVEASSQMGRKHFYGPTPGITLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFVAVHKVFGASNVSKMLLEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISTLQQQVQSLQAELNAIRAEILKYKYREAASLISSNHAALVSSADAISAAIPTNSQPQGLSQPLTPPPPPKPLHTHPLKPLHSPSVILSSFSSSSTSSVYTPPKSSMSLGSISSTENVPYFV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3505g00002 246 Coils Coil 124 151 - -
Vium3505g00002 246 ProSiteProfiles LOB domain profile. 44 145 IPR004883 -
Vium3505g00002 246 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 41 191 - -
Vium3505g00002 246 MobiDBLite consensus disorder prediction 222 246 - -
Vium3505g00002 246 MobiDBLite consensus disorder prediction 185 201 - -
Vium3505g00002 246 Pfam Lateral organ boundaries (LOB) domain 45 141 IPR004883 -
Vium3505g00002 246 MobiDBLite consensus disorder prediction 177 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3505g00002 Vium-Chr3505 4188 5640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3505g00002 26 158 AS2 family AT2G30340 78.358 1.36e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium3505g00002 LOB 2.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3505g00002 - - gmx:100813489 355.91