Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3505g00001 ATGTTTGGACATCAGGATATAGATAGATTAGAGGAGATAACAAAGGTGAGAGCAGAGGTGGAGGCTTCTTCTCAAATGGGAAGGAAGCATTTCTATGGTCCAACTCCTGGGATAACCTTAAACACAGTAACCCCTTGTGCTGCATGCAAGCTTTTGAGAAGAAGGTGTGCTGAAGAATGCCCTTTCTCTCCTTATTTTTCACCACACGAGCCTCAAAAGTTTGTAGCCGTTCACAAAGTGTTTGGTGCAAGCAATGTCTCCAAGATGCTTCTGGTACCAGAGGGCCAAAGAGCTGATGCAGCAAATAGCCTTGTTTACGAAGCTAACTTGAGGCTGAGAGATCCTGTATATGGATGCATGGGTGCAATATCAACTTTGCAGCAACAAGTTCAATCCTTACAAGCAGAACTGAATGCAATAAGGGCAGAGATACTAAAATACAAATATAGAGAGGCTGCAAGTCTCATTTCTTCTAATCATGCAGCTTTGGTTTCTTCAGCTGATGCAATCTCAGCAGCAATTCCCACAAACTCACAACCACAAGGTCTTTCTCAACCTCTTACTCCTCCTCCTCCACCAAAACCATTGCATACTCATCCACTAAAACCATTGCATTCTCCTTCTGTTATCCTTTCATCCTTCTCTTCATCTTCAACTTCTTCTGTGTACACTCCTCCTAAAAGCTCAATGAGCCTTGGATCCATTTCCAGCACTGAAAATGTCCCATACTTTGTTTAG 738 0.4282 MFGHQDIDRLEEITKVRAEVEASSQMGRKHFYGPTPGITLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFVAVHKVFGASNVSKMLLVPEGQRADAANSLVYEANLRLRDPVYGCMGAISTLQQQVQSLQAELNAIRAEILKYKYREAASLISSNHAALVSSADAISAAIPTNSQPQGLSQPLTPPPPPKPLHTHPLKPLHSPSVILSSFSSSSTSSVYTPPKSSMSLGSISSTENVPYFV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3505g00001 245 MobiDBLite consensus disorder prediction 221 245 - -
Vium3505g00001 245 MobiDBLite consensus disorder prediction 184 200 - -
Vium3505g00001 245 Pfam Lateral organ boundaries (LOB) domain 45 140 IPR004883 -
Vium3505g00001 245 MobiDBLite consensus disorder prediction 176 202 - -
Vium3505g00001 245 ProSiteProfiles LOB domain profile. 44 144 IPR004883 -
Vium3505g00001 245 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 41 190 - -
Vium3505g00001 245 Coils Coil 123 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3505g00001 Vium-Chr3505 4182 5640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3505g00001 26 157 AS2 family AT2G30340 77.612 5.61e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium3505g00001 LOB 4.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3505g00001 - - gmx:100813489 349.362