Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3502g00002 ATGCCTGAGCTGCTACACGGGATTCTTAAGGTAACCATAGATGAAGTTGATAGGCTGCATACTGGATGTCATTTGGATTTCTGTCAGAAGGGCACAACACACAAGGGTAAGAGATTTCTAGCCCAAGTCAAGGGTTGTCTGCTGTGCAGGCCTGAGATTGTTGGAACAAGATTGTATGCAACAGTTGATTTAGACAAGGCAAGGGTTGGACGAACGAGAATGATAGGAAACCGACCCTCAAACCCAAAGTGGAACCAGGACTTCGAAATCTACTGTGCACATCGTATCTCAAACATCATATTCACTGTCAAAGATGGCAATCCAATCGGAGCAACTCTAATCGGAAGAGCCTATGTCCCTGTGGAGCAAGTTCGTAAGCGCCCCATAGTTAAGAGATGGGTTGAGATATTAGACGAAGAAGATCGTCGTCCCGTGCCGGGTCACTCCAGAATCTGCGTCAGCGTGAAATTCACCAGCGTCACTCAGGACCCAACATGTTCATGGTCTCAGGGAATTCGCATGCCATTTTCTGGAGTTCCTCGTACATTCTTCAATCAGAGAGAAGGTTGTCATGTTACTTTGTACCAGGATGCTCATGCCCCGCGTGGCGTTGGTGTTGTCCCATACATTCCAATATCCGAAGGAAAAGACTACTTGCCCGCAAGATGTTGGGAGGACATTTACACTGCCATTATGGATGCTAAGCATCTTGTTTACATAACTGGTTGGTCTGTTTACACTGAAATAGCATTGGTTAGAGACAAAGAGGAATCAAATATCACCCTCGGGGAGTTACTTAAGAAGAAGGCTGACGAAGGTGTTCGAGTTCTTCTGCTTGTTTGGAAAGACAGAACTTCTGTACCAGAATTGACCAAAGATGGCTTGATGGGAACTCATGATGAGGAAACTGCTGCTTATTTTAGAAACACAAAGGTGCATTGTTTTCTGTGTCCACGGAACCCGGACGATGGGAAAAGCATGATTCAAGGATTTCAAACATCAACTATGTTCACTCATCACCAAAAGAGTGTGGTCGTTGATGCAGGTTTTGTAGGGTCATCACAGAAGCGAAGTGTGGTGAGTTTCATAGGTGGCCTTGATCTTTGTGACGGGAGGTATGACACCAGGGACCATCCTCTATTTTCAACTTTGAATACGGTGCATAGAAACGATTTCCATCAACCAAACTTTCCAACTGCTTCCATTGATAAAGGTGGTCCAAGAGAGCCATGGCATGACATTCATTGCAAGCTAGAAGGCCCTATTGCTTGGGATGTTCTGTACAACTTTGAGCAAAGGTGGGAGAAGCAAGTTGGGAAGGAACTGCTATTCTCGCTTGATGATCTTGATGACATTCTAGTCCACCCTTCTGTCGCACAAAAATCAGAACTGGGAGAAGAAGACACATGGAATGTTCAGCTGTTTAGATCCATAGATGGTGGTGCTGCTTTGGACTTTCCCCAAGCCCCGAAAGAAGTTGCTGCATTAGGCCTTGTTAGTGGGAAAGACAATATGATTGAGAGAAGTATTCAGGATGCCTACATTAATGCTATTAGGCGTGCAAAAAACTTCGTCTACATTGAGAATCAATACTTCTTAGGGAGTTCTTATGCTTGGCACCCAACTAATGACTTTGTGATTGAGAACATTGGTGCTTTGCATCTTATACCAAAGGAGTTGACATTGAAGATTGTGAGCAAGATTGAAGCAAAAGAGAGGTTTTCTGTGTACATAGTGATCCCAATGTGGCCTGAAGGTGTACCTGAAACTGAGTCGGTTCAAGCAATATTAGATTGGCAGAGAAGAACCATGGAGATGATGTATTCCGACATTGCTGATGCCTTAGCAAAAGTCGGCATTCAAGCACACCCTCGAGATTATTTGACATTTTTTTGCCTTGGCAATAGGGAGCATAAGGAACCGGGAGAGTATACTCCTCCACAGGAACCAGAGCCTGAGAGTGACTACAGAAGAGCACAAAATTCTAGGAGGTTCATGATCTATGTCCATTCCAAAATGATGATAGTTGATGACGAATATATAATCGTTGGGTCTGCTAACATAAATCAAAGATCAATGGAGGGTTCAAGAGACAGTGAGATTGCAATGGGTGCATTCCAACCACGTCATCTAGCATGGAATGGAAGACCCAGAGGGGAGATATATAGATTCCGACGTGCACTATGGTATGAGCACCTTGGGGACCATGGTTTTGACTCAAAAATCTTCGACAACCCAGAACATTTGGACTGCATAGATCTTGTGAATAGGCTTGCCGAGGAAAACTGGGACATGTACTCAAAGGAAACATTTGATCAAGTTAGAAATTTTCACCACCTCATGCGCTACCCTATACATGTAGCCCACGATGGAACCATAACAACCCTTCCAGGGTTTGAACATTTTCCTGACACCAAAGCTCGGATTTTGGGTTCCTATTCATATTTCCTTCCTTCAATTCTTACCACCTAA 2472 0.4409 MPELLHGILKVTIDEVDRLHTGCHLDFCQKGTTHKGKRFLAQVKGCLLCRPEIVGTRLYATVDLDKARVGRTRMIGNRPSNPKWNQDFEIYCAHRISNIIFTVKDGNPIGATLIGRAYVPVEQVRKRPIVKRWVEILDEEDRRPVPGHSRICVSVKFTSVTQDPTCSWSQGIRMPFSGVPRTFFNQREGCHVTLYQDAHAPRGVGVVPYIPISEGKDYLPARCWEDIYTAIMDAKHLVYITGWSVYTEIALVRDKEESNITLGELLKKKADEGVRVLLLVWKDRTSVPELTKDGLMGTHDEETAAYFRNTKVHCFLCPRNPDDGKSMIQGFQTSTMFTHHQKSVVVDAGFVGSSQKRSVVSFIGGLDLCDGRYDTRDHPLFSTLNTVHRNDFHQPNFPTASIDKGGPREPWHDIHCKLEGPIAWDVLYNFEQRWEKQVGKELLFSLDDLDDILVHPSVAQKSELGEEDTWNVQLFRSIDGGAALDFPQAPKEVAALGLVSGKDNMIERSIQDAYINAIRRAKNFVYIENQYFLGSSYAWHPTNDFVIENIGALHLIPKELTLKIVSKIEAKERFSVYIVIPMWPEGVPETESVQAILDWQRRTMEMMYSDIADALAKVGIQAHPRDYLTFFCLGNREHKEPGEYTPPQEPEPESDYRRAQNSRRFMIYVHSKMMIVDDEYIIVGSANINQRSMEGSRDSEIAMGAFQPRHLAWNGRPRGEIYRFRRALWYEHLGDHGFDSKIFDNPEHLDCIDLVNRLAEENWDMYSKETFDQVRNFHHLMRYPIHVAHDGTITTLPGFEHFPDTKARILGSYSYFLPSILTT 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3502g00002 823 Pfam C2 domain 46 135 IPR000008 -
Vium3502g00002 823 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 335 372 IPR001736 GO:0003824
Vium3502g00002 823 PANTHER PHOSPHOLIPASE D 4 812 IPR015679 -
Vium3502g00002 823 SMART pld_4 335 372 IPR001736 GO:0003824
Vium3502g00002 823 SMART pld_4 665 692 IPR001736 GO:0003824
Vium3502g00002 823 SUPERFAMILY Phospholipase D/nuclease 510 734 - -
Vium3502g00002 823 SUPERFAMILY Phospholipase D/nuclease 175 445 - -
Vium3502g00002 823 FunFam Phospholipase D delta 214 452 - -
Vium3502g00002 823 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 159 IPR035892 -
Vium3502g00002 823 ProSiteProfiles C2 domain profile. 1 134 IPR000008 -
Vium3502g00002 823 PIRSF PLD_plant 1 823 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vium3502g00002 823 Gene3D C2 domain 41 166 IPR035892 -
Vium3502g00002 823 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 665 692 IPR001736 GO:0003824
Vium3502g00002 823 CDD C2_plant_PLD 4 158 - -
Vium3502g00002 823 Gene3D Endonuclease Chain A 487 707 - -
Vium3502g00002 823 SMART C2_3c 8 133 IPR000008 -
Vium3502g00002 823 Gene3D Endonuclease Chain A 214 451 - -
Vium3502g00002 823 Pfam Phospholipase D C terminal 741 812 IPR024632 -
Vium3502g00002 823 Pfam Phospholipase D Active site motif 666 692 IPR001736 GO:0003824
Vium3502g00002 823 Pfam Phospholipase D Active site motif 335 372 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3502g00002 Vium-Chr3502 18684 22855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3502g00002 4 823 Phospholipase D Gene Family (Wang group) AT3G15730 62.500 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3502g00002 K01115 - gmx:100794115 1417.91