Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3502g00001 ATGTCGCGTTTGCTGCATGGGACTCTCAATGTGACCATATACGAGGTTGATACACTGCCAACTCTTAACGACTGCGATTTCAATCTCTGCTGCAAGGGTACAAATCGAAGCGTGAGGAAGAGATTCCTTTCCCAACTTAAGAGTTGTCTGTTCTGTCAATGCCAGGGCCAGCCCGGGTCTACCCAAACGGGTCTGTATGCAACAATTGATTTACATAAGGCGAGAGTTGGAAGGACTAAAGTGATAAATGATGAACCCTCTAACCCCAGGTGGAATGAGACCTTTCGCATATACTGTGCCCATTTGATCTCCCATGTTATATTCACTGTCAAACAAAAAGACCCCATTGATGCAACTCTAATTGGAAGAGCTTATGTCCCAGTTGAGCAAGTCGTGAACGGTAACATAGTGGACACATGGGTCCCAATACTAGACGAGGATCGTAACCCCATTCCAAGTGACTCTAAAATCCATGTCAGAATGAAATTCTCTAATGTTTTGAATGACATAAACTGGACTGGAGGAATAAGAATTCCGAGTTTTCAAGGAGTTCCCCACACTTTCTTCGGTCAAAGAACTGGTTGCAACGTTACTTTGTACCAAGATGTCCATGTTTCGGATGGTTTTCAGCCGTGGATTCCCTTGTCGGGAAGAAGGAATTATGAGTTTAGGAAATGCTGGGAGGATATTTACAGTGCCATTGTGGAGGCTAGATACTTTATTTATATAACTGGCTGGTCTGTGTACACTGAAATAACCTTGATTAGGAACCCCATGCAGCCCAAGAGAATCACCCTTGGGGAACTTCTCAAGAGGAAAGCTGAGGAAGGTGTTAAGGTTCTTATGCTTGTTTGGGATGATAGAACATCTGTGCCAGACTTCAAGAAAGATGGCTTGATGGCAACCCATGATCAAGAAACTGCTGCTTACTTCAAAGACACAAAGGTGAATTGTGTTTTGTGTCCGCGGAACCCAGATGTTGGAAGAAGCATTGTGCAAGGTTTGGAAACTTCAACAATGTTCACTCATCACCAGAAGAGTGTAGTTGTTGATAGCCAATTTGTTGGTGCTGCGGTGGGACAACGACAAAAGAGAACGATAACAAGTTTTGTTGGTGGCATTGATCTTTGCGATGGGAGATACGATACTCAGGAACATCCTCTATTTTCAACTTTGGACACAGTGCATAAAGGTGACTTCCATCAGCCAAATTTCCCAGGTGCTTCCATCAAGAAAGGTGGTCCAAGAGAGCCATGGCATGATATTCACTGCAAGTTAGAAGGGAGTGTTGCTTGGGATGTTTTGTTCAATTTTCAACAAAGGTGGGAGAAGCAGGTTGGGAATCAGTTCCTATTCCCTTCGAGCATGCTTAACGAATACTTTGTCCCTCGATCCACTGCGGCAACGACAAATGATAATGACACATGGAATGTTCAGTTGTTCAGATCCATTGATGGTGGTGCAGCTTCTGGCTTCTCCCCAGACCCAAAAGTTGCAGCTGAATCCGGCCTTGTTAGTGTGAACAACAACATCATTGATAGAAGTATTCAAGATGCATATATAAATGCTATTCGAAGAGCCCAAAACTTCATCTACATTGAAAACCAATATTTCCTTGGGAGTTCATACGCCTGGCAAGCATCTGATATAGTAGTTGAGGATATTGGTGCATTGCATCTTATACCAAAGGAGCTGTCATTGAAGATTGTTAGCAAGATTGAAGCAGGGGAAAGATTTTCTGTGTATGTTGTCATACCAATGTGGCCAGAAGGCATACCTGAGAGTGATTCAGTTCAAGCAATACTAGACTGGCAAAGGAGGACAATGGAGATGATGTATGCTGATATAGCTCAAGCCATTCAAAGAACTGGAATTGAAGCTCATCCAAGAGACTACTTGACCTTTTTCTGCCTTGGAAACCGTGAGCGTCAGAAATATAGCGAGTACACTCCTACTGAGGCACCAGAACCGGACACTGATTACAGCAGAGCACAAAAGTCTAGGCGATTCATGATCTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATCATTGGTTCTGCGAACATAAACCAAAGATCAATGGATGGAGGAAGAGACAGTGAGATCGCGATGGGTGCATTCCAGCCACGGCATTTAGCGTGTAATGGGCCACCCAGAGGACAGATATATGGATTTCGACGTGCACTGTGGTATGAACACCTCGGAGATGTTAATGATAGTAGCATTTTCGACGATCCTGAAAGGGAAGAATGCATGAAGCTTGTGAATCATCTTGCTGAAACCAACTGGGCTCTGTACTCTGAGCAAACTTTTTATGAGAATATAGAATTTCACCACCTCATGCGTTATCCCATAGAAGTAACCAACCATGGAGCCATAACGAACCTTCCAGGGCTTCAATATTTTCCTGACACTGAGGCTCGGATTTTGGGTGCCAAATCAGAGTATCTTCCTCCAATTCTCACCACTTAG 2484 0.4356 MSRLLHGTLNVTIYEVDTLPTLNDCDFNLCCKGTNRSVRKRFLSQLKSCLFCQCQGQPGSTQTGLYATIDLHKARVGRTKVINDEPSNPRWNETFRIYCAHLISHVIFTVKQKDPIDATLIGRAYVPVEQVVNGNIVDTWVPILDEDRNPIPSDSKIHVRMKFSNVLNDINWTGGIRIPSFQGVPHTFFGQRTGCNVTLYQDVHVSDGFQPWIPLSGRRNYEFRKCWEDIYSAIVEARYFIYITGWSVYTEITLIRNPMQPKRITLGELLKRKAEEGVKVLMLVWDDRTSVPDFKKDGLMATHDQETAAYFKDTKVNCVLCPRNPDVGRSIVQGLETSTMFTHHQKSVVVDSQFVGAAVGQRQKRTITSFVGGIDLCDGRYDTQEHPLFSTLDTVHKGDFHQPNFPGASIKKGGPREPWHDIHCKLEGSVAWDVLFNFQQRWEKQVGNQFLFPSSMLNEYFVPRSTAATTNDNDTWNVQLFRSIDGGAASGFSPDPKVAAESGLVSVNNNIIDRSIQDAYINAIRRAQNFIYIENQYFLGSSYAWQASDIVVEDIGALHLIPKELSLKIVSKIEAGERFSVYVVIPMWPEGIPESDSVQAILDWQRRTMEMMYADIAQAIQRTGIEAHPRDYLTFFCLGNRERQKYSEYTPTEAPEPDTDYSRAQKSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAFQPRHLACNGPPRGQIYGFRRALWYEHLGDVNDSSIFDDPEREECMKLVNHLAETNWALYSEQTFYENIEFHHLMRYPIEVTNHGAITNLPGLQYFPDTEARILGAKSEYLPPILTT 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3502g00001 827 ProSiteProfiles C2 domain profile. 1 141 IPR000008 -
Vium3502g00001 827 SMART C2_3c 8 140 IPR000008 -
Vium3502g00001 827 Gene3D C2 domain 5 171 IPR035892 -
Vium3502g00001 827 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 339 380 IPR001736 GO:0003824
Vium3502g00001 827 SUPERFAMILY Phospholipase D/nuclease 514 741 - -
Vium3502g00001 827 FunFam Phospholipase D 483 716 - -
Vium3502g00001 827 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 165 IPR035892 -
Vium3502g00001 827 PANTHER PHOSPHOLIPASE D 4 815 IPR015679 -
Vium3502g00001 827 Pfam Phospholipase D C terminal 746 817 IPR024632 -
Vium3502g00001 827 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 670 697 IPR001736 GO:0003824
Vium3502g00001 827 PIRSF PLD_plant 1 827 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vium3502g00001 827 Gene3D Endonuclease Chain A 212 473 - -
Vium3502g00001 827 SMART pld_4 670 697 IPR001736 GO:0003824
Vium3502g00001 827 SMART pld_4 339 380 IPR001736 GO:0003824
Vium3502g00001 827 Pfam C2 domain 8 143 IPR000008 -
Vium3502g00001 827 CDD C2_plant_PLD 1 163 - -
Vium3502g00001 827 Gene3D Endonuclease Chain A 489 712 - -
Vium3502g00001 827 Pfam Phospholipase D Active site motif 671 697 IPR001736 GO:0003824
Vium3502g00001 827 Pfam Phospholipase D Active site motif 339 380 IPR001736 GO:0003824
Vium3502g00001 827 FunFam Phospholipase D delta 217 459 - -
Vium3502g00001 827 SUPERFAMILY Phospholipase D/nuclease 169 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3502g00001 Vium-Chr3502 10700 14191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3502g00001 4 827 Phospholipase D Gene Family (Wang group) AT3G15730 62.878 0.0 1069
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3502g00001 K01115 - gmx:100791688 1409.05