Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00067 ATGTTCTCTTCCACATATGACTCCAACCTTTTTCCAAACTTCCCTTCTTCTTCTTACCCTATCCTTCCTTTTCTCATTGATCCTGAAAATGATTTTGCAAGCAACACCCTTTTTGATGACCCTCTTCTTGTTCCCTTCACACCCATCACCCATGATCCTCCATTTCCTGAAGAGACTGTTGCTAATTTTGCAGTTGCTGACTGCACTGCCATTCTTGAACAAGATGCAAACACTAACTATGGTTCCCACAATGGTAGCATGTCCAATTTTCTGACCCAGAAACCAGCCATAGCAAAGAAAGACAGGCACAGTAAGATTCACACATCTCAGGGTTTGAGGGACCGTAGGGTGAGATTATCAAGTGAAATAGCCCGCAAGTTCTTTGATCTTCAGGACATGTTAGAGTTTGACAAACCAAGTAACACCCTTGAGTGGCTTTTCACAAAGTCTGAGAATGCGATCAAAGAACTAGCCCAAAGTAAGCATAGCGGCAGTATTAGTGGGGGTGACAAGTGTTCCCGCGACGCTTCTGTGGATTCAAATAACAACAAATCATTGGCGGGTAGTGGGGTTGATGGTTCCAAAGGGAGGAAGTCAAAATCGGCACAGAAGGATGATGCTTGTGTTCAGACCAAAAAGGAGTCAAGGGAAAGGGCAAGAGCAAGAGCAAGAGAGAGGACTTGCTACAAAATGTGTAGCACTAGAAGGGTGCAGCAAGACTTTGATGAAAGGTGCCCTGTAACTGCAAACACTCAAATGCTGCACCAATTGAGGTCATCCATTCTGCCTGAACCTGAAGCTTACGCGAGATGGGTTCAGCCTTATAACCCTTTTCTCATTCATAATGAAGCACCCAGAGATGGCTTTGACGTCATTGAAGAATCTATTATGATTAAAAGGAATATGAAGCCGTCAACTGTGATGGCTTCTCATCACCAAAACCAAAACCAAAACCAAAGCCAAAACCTTGTGATCCCTAGGGATGCAAGTTTCAACAACAATGTGTGCCCCTTGCTACCCTATTCCACTCCAGACTGGGACACTAATGGGGCCTTTACTGGATACTCCAACTTTTGTTCAATAGGAACCATGAACCTATCTACATGTTTCATGAACCCGTGA 1122 0.4412 MFSSTYDSNLFPNFPSSSYPILPFLIDPENDFASNTLFDDPLLVPFTPITHDPPFPEETVANFAVADCTAILEQDANTNYGSHNGSMSNFLTQKPAIAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELAQSKHSGSISGGDKCSRDASVDSNNNKSLAGSGVDGSKGRKSKSAQKDDACVQTKKESRERARARARERTCYKMCSTRRVQQDFDERCPVTANTQMLHQLRSSILPEPEAYARWVQPYNPFLIHNEAPRDGFDVIEESIMIKRNMKPSTVMASHHQNQNQNQSQNLVIPRDASFNNNVCPLLPYSTPDWDTNGAFTGYSNFCSIGTMNLSTCFMNP 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00067 373 ProSiteProfiles TCP domain profile. 99 157 IPR017887 -
Vium349g00067 373 MobiDBLite consensus disorder prediction 174 189 - -
Vium349g00067 373 MobiDBLite consensus disorder prediction 197 222 - -
Vium349g00067 373 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 91 318 IPR005333 GO:0003700
Vium349g00067 373 MobiDBLite consensus disorder prediction 159 222 - -
Vium349g00067 373 ProSiteProfiles R domain profile. 213 230 IPR017888 -
Vium349g00067 373 Pfam TCP family transcription factor 98 233 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00067 Vium-Chr349 600360 601976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00067 97 340 TCP Transcription Factor Family AT1G67260 35.632 1.93e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium349g00067 TCP 3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00067 - - aprc:113871835 571.237