Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium349g00059 ATGGACACGCCAGATAGGAGCAAGATCAACACCCCTCTTTCTCAGTTTGAGGATTCACCTGTATTTAACTATATCAGTAATCTATCTCCTATAGAGCCTGTTAAGTCTGTTCACATTACCCAGACCTTCAATTCGCTTAGCTTCTCATCTCCTCCATCTGTTTTCACATCACCCCATGTCAATTGTCACAGAGAATCCAGATTCCTCAGGAGGCATAACCTTTTGGATGCATCCAAATGTAAGGGTTCATCTGAAGATATAAACAATGTTTATTCATGTGAAAAGACTCCCGCAGATTCAACTCAGCCATGTCATGAATCAAGTGAGCCACAGGAAAATACCAATCCAAATATTTCCATAAGAGATACCTCAATCGAGCCATGTGATGAAAACCCAAATATCTCAATTGAGGTCCCACAAGGCTTGAAGTATAATTTGGCTAGCCCAGGATATGAACCTGTGATCTGTGCTGATGAGGCTGACTCTCTTTTGGAACTGCCAGGCAAACCAGGATCAGATGTTTCTTATGTTCCAGATGACTCTGAAAAGGATTCAATTGAGGGTGAAATGCATCTTCCAGCTTTATGTCAAAATGAGGAAAAAATTGAAGGACCAAATTGTGGTGTGGATGATTTAATTAATGAAGCCTCTGATCTGTTAATGTTTAGTCCCCCAAATATGAAAGAAGCTTTTAAGGATATAAATAAACAATTAAATCCTTCAACAAAGCTTACCAATTTGAGGACTTTGTTACGACAATCTGCTACCAATGATGGTCATCAAATGCACATTGTTGATACAGTTGCTTCTGGTTCAGAACATGAAATTGAAAATCATCCTTGTGAATCAGGAGCAGCCACAGACACAGTTCAGAGACAAGGCAAACATAACAATGTTGCTTTGGTGGCTAGCAATCCCATTGAGAAAGTGGATGATAAGCTTGTTTATGTGACACACCGTGGTATACGGAGACGCTGTTTAGATTTTGAGATGGCTAGTGTCCAAAGGAAGAATCTAGATGGTAAATCAAACACCAATTCCAGTGCAGAAAAATCTGATGAGATGGATGTTAGTAAAGGAAAGCAACTGCTCCCCATTAAACATAGTGGGGATTCACGGAAGTGTGTTTTGCCTGGAATTGGTTTGCACTTGAATGCCCTTGCTAGCTTAAATGATTGCAAAAACATAAAAATTGAGACATTGCTATCTGGAAGGCAACCTAACCTTCCCAGCTCCTCCTCATCCTTGCAACTTTCTGCAAGCCAAGATCATCAACTATCTTTGGTACCTACATCAGTGGAAAAAGATATGGAGCAATCAGATAATGAAGTTCAGCCTGGTGAAGATTGTACCCAGCCTTTGGTTCACATGCCTGGTGAAGATTGCACCCAGCCTTTGGTTCACATGCCTGGTGAAGATTGTACCCAGCCCTTGGTTCACATGCCTGGTGAAGATTTCCAGCAGAATAGCCCTAAAAAGAAAAGGCGCAGGTTGGAACAAGATGGGGAAGGGGAGTCTTGCAAGCGTTGTAATTGTAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCGGGAGTCTACTGCATAGAGCCCTGTTCATGTCGTGATTGCTTTAACAAACCTATTCATGTTGATACCGTCCTTCAAACTCGCCAGCAGATTGAGTCTCGAAATCCACTTGCTTTTGCTCCTAAAGTCATACGGAGTTCTGATTCTGTACCTGAAATTGGGGATGACCCTAACAAAACTCCAGCTTCAGCCCGACACAAAAGAGGATGTAATTGCAAGAAATCAAGCTGCCTAAAGAAATACTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATAAGCTGCAGATGTGAAGGATGCAAGAACACGTATGGTAGAAAGGATGGTTCTGTTCATTCTGGAATAGAAGCCAAGCCCGAAGAAGAAACAGAAGCATGTGAAAAGGGTGTGATGGAAAATGCTTCACATAAAACTGAAACACAAAATACTGAAGACCATCCTGATCATGCTCTTCCTACAACACCATTACGTCTTTCCAGATCATTGATCCCATTACCCTTTTCATCAAAGGGTAAGCCACCAAGATCTTTTGTTACTACCATCTCCAGTTCTGGATTGTTTGTCAGCCAAAAGCTCGGGAAATCAAGTGCTCCGCGGTCTCAACCTAAATTTGAAATGCCTGTGCAAACTGTTCCGGATGATGACTCTCCTGTCACCTGCATCAAAACTTCTTCTCCAAATGGCAAGAGGATCTCCTCTCCTAATTGTGACGTGGGATCATCTCCTACTCGCAGAGGTGGGAGGAAGTTGATCTTACAATCTATCCCTTCATTTCCTTCTCTCACCCCTCACAATCTTCGGAGTGACTGA 2388 0.4213 MDTPDRSKINTPLSQFEDSPVFNYISNLSPIEPVKSVHITQTFNSLSFSSPPSVFTSPHVNCHRESRFLRRHNLLDASKCKGSSEDINNVYSCEKTPADSTQPCHESSEPQENTNPNISIRDTSIEPCDENPNISIEVPQGLKYNLASPGYEPVICADEADSLLELPGKPGSDVSYVPDDSEKDSIEGEMHLPALCQNEEKIEGPNCGVDDLINEASDLLMFSPPNMKEAFKDINKQLNPSTKLTNLRTLLRQSATNDGHQMHIVDTVASGSEHEIENHPCESGAATDTVQRQGKHNNVALVASNPIEKVDDKLVYVTHRGIRRRCLDFEMASVQRKNLDGKSNTNSSAEKSDEMDVSKGKQLLPIKHSGDSRKCVLPGIGLHLNALASLNDCKNIKIETLLSGRQPNLPSSSSSLQLSASQDHQLSLVPTSVEKDMEQSDNEVQPGEDCTQPLVHMPGEDCTQPLVHMPGEDCTQPLVHMPGEDFQQNSPKKKRRRLEQDGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCRDCFNKPIHVDTVLQTRQQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTYGRKDGSVHSGIEAKPEEETEACEKGVMENASHKTETQNTEDHPDHALPTTPLRLSRSLIPLPFSSKGKPPRSFVTTISSSGLFVSQKLGKSSAPRSQPKFEMPVQTVPDDDSPVTCIKTSSPNGKRISSPNCDVGSSPTRRGGRKLILQSIPSFPSLTPHNLRSD 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium349g00059 795 MobiDBLite consensus disorder prediction 347 361 - -
Vium349g00059 795 MobiDBLite consensus disorder prediction 93 129 - -
Vium349g00059 795 MobiDBLite consensus disorder prediction 742 766 - -
Vium349g00059 795 MobiDBLite consensus disorder prediction 781 795 - -
Vium349g00059 795 MobiDBLite consensus disorder prediction 715 795 - -
Vium349g00059 795 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 594 629 IPR005172 -
Vium349g00059 795 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 508 543 IPR005172 -
Vium349g00059 795 MobiDBLite consensus disorder prediction 405 425 - -
Vium349g00059 795 MobiDBLite consensus disorder prediction 660 679 - -
Vium349g00059 795 SMART CXC_2 505 546 IPR033467 -
Vium349g00059 795 SMART CXC_2 591 632 IPR033467 -
Vium349g00059 795 ProSiteProfiles CRC domain profile. 506 631 IPR005172 -
Vium349g00059 795 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 790 IPR044522 GO:0003700
Vium349g00059 795 MobiDBLite consensus disorder prediction 338 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium349g00059 Vium-Chr349 505776 511413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium349g00059 10 790 CPP Transcription Factor Family AT3G22780 41.286 1.96e-153 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vium349g00059 TCR 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium349g00059 - - var:108326442 1564.28